Factsheet for Solyc02g087150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g065060.2.1
Solyc02g090540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	Solyc02g065060.2.1	AT3G50560.1	21798944
AT5G14910.1	Solyc02g090540.2.1	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001367	Potato	plastid	94.09	94.09
VIT_14s0066g01780.t01	Wine grape	plastid	51.61	52.46
CDX85578	Canola	plastid	47.31	49.72
AT5G14910.1	Thale cress	plastid	45.7	47.75
Bra023492.1-P	Field mustard	plastid	45.7	47.49
CDX91016	Canola	plastid	43.55	46.82
KRG93395	Soybean	nucleus, plastid	46.24	46.74
Bra006272.1-P	Field mustard	plastid	45.16	46.15
GSMUA_Achr8P09820_001	Banana	plastid	46.77	45.31
KRH18591	Soybean	plastid	44.62	44.86
EES05886	Sorghum	plastid	33.33	39.74
Zm00001d038047_P001	Maize	plastid	33.33	38.51
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	33.33	37.8
HORVU1Hr1G064750.1	Barley	plastid	32.26	35.29
TraesCS1D01G259500.1	Wheat	plastid	31.72	33.91
TraesCS1B01G270000.1	Wheat	plastid	30.65	33.53
TraesCS1A01G259700.2	Wheat	plastid	31.18	29.29
CDX78599	Canola	plastid	44.62	18.0
CDX70580	Canola	plastid	46.24	17.77

Protein Annotations

EnsemblPlants:Solyc02g087150.2.1	EnsemblPlantsGene:Solyc02g087150.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:IPR006121	PANTHER:PTHR35756	PFscan:PS50846
SEG:seg	UniParc:UPI0002767D48	UniProt:K4BBM2	MapMan:17.7.2.3.3	:	:

Description

No Description!

Coordinates

chr2:+:49644125..49647247

Molecular Weight (calculated)

19558.9 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.048

Length

186 amino acids

Sequence
(BLAST)

001: MATVSAFSVC RAKSHSRIPH SSSNAIPQLF PMQFLRCQSN RSIGGGYSCS SSSVKAKVPL RTTRICSATE EDGATAVAEE ESAAPTTSDQ TVSVSVSPSD
101: VLTMFFQAEG TMNEAAIPSV TNSLEDIEGI TGLKIQVVEG IASVELTKQT TIQATGVASS LVETIQGSGF KLQTLNLSFQ DEEDIS

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.