Factsheet for Zm00001d038047_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031808_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	Zm00001d031808_P001	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05886	Sorghum	plastid	75.78	78.21
TraesCS1B01G270000.1	Wheat	plastid	69.57	65.88
TraesCS1D01G259500.1	Wheat	plastid	70.19	64.94
HORVU1Hr1G064750.1	Barley	plastid	68.32	64.71
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	64.6	63.41
TraesCS1A01G259700.2	Wheat	plastid	68.94	56.06
GSMUA_Achr8P09820_001	Banana	plastid	44.72	37.5
AT5G14910.1	Thale cress	plastid	40.37	36.52
CDX91016	Canola	plastid	39.13	36.42
Bra023492.1-P	Field mustard	plastid	39.13	35.2
CDX85578	Canola	plastid	38.51	35.03
Bra006272.1-P	Field mustard	plastid	39.13	34.62
Solyc02g087150.2.1	Tomato	plastid	38.51	33.33
VIT_14s0066g01780.t01	Wine grape	plastid	37.89	33.33
KRH18591	Soybean	plastid	37.89	32.97
PGSC0003DMT400001367	Potato	plastid	37.89	32.8
KRG93395	Soybean	nucleus, plastid	35.4	30.98
CDX78599	Canola	plastid	39.75	13.88
CDX70580	Canola	plastid	39.75	13.22

Protein Annotations

MapMan:17.7.2.3.3	UniProt:A0A1D6M2W3	ProteinID:AQK85521.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0016020	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:IPR006121
PFscan:PS50846	PANTHER:PTHR35756	UniParc:UPI000221CBB7	EnsemblPlantsGene:Zm00001d038047	EnsemblPlants:Zm00001d038047_P001	EnsemblPlants:Zm00001d038047_T001
SEG:seg	:	:	:	:	:

Description

Heavy metal transport/detoxification superfamily protein

Coordinates

chr6:+:146025759..146027781

Molecular Weight (calculated)

16884.2 Da

IEP (calculated)

4.391

GRAVY (calculated)

0.160

Length

161 amino acids

Sequence
(BLAST)

001: MTSSTAFSQL FPSAAAVSPV PRCVSLQLFC ASGGVVPGWR RRCRRMAMVR AATVDAAAPA YTSDSLILYF KAEGTMEERA IPKITESLEG MEGVKDLEVL
101: IEEGIGSVVL TKETTVQATG VASNLVEAIQ GAGFKLQTLS LSFDDFDEPA AGAGGTVQSS E

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.