Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002020 | |
| PGSC0003DMT400025952 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14910.1 | PGSC0003DMT400002020 | AT3G50560.1 | 21798944 |
| AT5G14910.1 | PGSC0003DMT400025952 | AT3G50560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087150.2.1 | Tomato | plastid | 94.09 | 94.09 |
| VIT_14s0066g01780.t01 | Wine grape | plastid | 52.15 | 53.01 |
| CDX85578 | Canola | plastid | 47.31 | 49.72 |
| Bra023492.1-P | Field mustard | plastid | 46.77 | 48.6 |
| AT5G14910.1 | Thale cress | plastid | 45.7 | 47.75 |
| CDX91016 | Canola | plastid | 44.09 | 47.4 |
| KRG93395 | Soybean | nucleus, plastid | 46.24 | 46.74 |
| Bra006272.1-P | Field mustard | plastid | 45.16 | 46.15 |
| GSMUA_Achr8P09820_001 | Banana | plastid | 46.77 | 45.31 |
| KRH18591 | Soybean | plastid | 44.62 | 44.86 |
| EES05886 | Sorghum | plastid | 32.26 | 38.46 |
| Os05t0337400-01 | Rice | extracellular, nucleus, plasma membrane, plastid | 33.87 | 38.41 |
| Zm00001d038047_P001 | Maize | plastid | 32.8 | 37.89 |
| HORVU1Hr1G064750.1 | Barley | plastid | 32.8 | 35.88 |
| TraesCS1D01G259500.1 | Wheat | plastid | 32.26 | 34.48 |
| TraesCS1B01G270000.1 | Wheat | plastid | 31.18 | 34.12 |
| TraesCS1A01G259700.2 | Wheat | plastid | 31.72 | 29.8 |
| CDX78599 | Canola | plastid | 44.62 | 18.0 |
| CDX70580 | Canola | plastid | 46.24 | 17.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001367 | EnsemblPlantsGene:PGSC0003DMG400000508 | EntrezGene:102581674 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:IPR006121 | PANTHER:PTHR35756 |
| PFscan:PS50846 | PGSC:PGSC0003DMG400000508 | RefSeq:XP_006338529.1 | SEG:seg | UniParc:UPI000295E226 | UniProt:M0ZIB8 |
| MapMan:17.7.2.3.3 | : | : | : | : | : |
Description
Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000508]
Coordinates
chr2:-:46793472..46796739
Molecular Weight (calculated)
19510.8 Da
IEP (calculated)
4.235
GRAVY (calculated)
0.004
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVSAFSVC RAKSHSQIPH SSSNAVPQLF PIQFLRFQSN SGICGGYSCT PSSVKAKVPL RTTRICSANE EDGATAVAEE ESAAPTTSDQ TVSVSVSPSD
101: VLTMFFQAEG TMNEAAIPSV TNALEDIEGI TGLKIQVVEG IASVELTKQT TIQATGVASS LVETIQGSGF KLQTLNLSFQ DEEDIS
101: VLTMFFQAEG TMNEAAIPSV TNALEDIEGI TGLKIQVVEG IASVELTKQT TIQATGVASS LVETIQGSGF KLQTLNLSFQ DEEDIS
001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV
Arabidopsis Description
AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.