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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, plasma membrane, plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus, plasma membrane, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
nucleus: 19621931
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os08t0476300-02

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14910.1 Os08t0476300-02 AT3G50560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038047_P001 Maize plastid 63.41 64.6
EES05886 Sorghum plastid 60.37 63.46
HORVU1Hr1G064750.1 Barley plastid 65.24 62.94
TraesCS1B01G270000.1 Wheat plastid 65.24 62.94
TraesCS1D01G259500.1 Wheat plastid 65.24 61.49
TraesCS1A01G259700.2 Wheat plastid 64.02 53.03
GSMUA_Achr8P09820_001 Banana plastid 45.73 39.06
CDX91016 Canola plastid 39.02 36.99
AT5G14910.1 Thale cress plastid 39.63 36.52
CDX85578 Canola plastid 39.02 36.16
Bra023492.1-P Field mustard plastid 39.02 35.75
Bra006272.1-P Field mustard plastid 38.41 34.62
VIT_14s0066g01780.t01 Wine grape plastid 38.41 34.43
PGSC0003DMT400001367 Potato plastid 38.41 33.87
Solyc02g087150.2.1 Tomato plastid 37.8 33.33
KRG93395 Soybean nucleus, plastid 36.59 32.61
KRH18591 Soybean plastid 35.98 31.89
CDX78599 Canola plastid 37.8 13.45
CDX70580 Canola plastid 39.63 13.43
Protein Annotations
MapMan:17.7.2.3.3EntrezGene:4338460UniProt:A0A0P0WL76ProteinID:BAS93458.1GO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0008150
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009719
GO:GO:0009735GO:GO:0009941GO:GO:0016020GO:GO:0030001GO:GO:0046872InterPro:HMA_dom
InterPro:IPR006121EnsemblPlantsGene:Os05g0337400EnsemblPlants:Os05t0337400-01PANTHER:PTHR35756UniParc:UPI0001C7CF36RefSeq:XP_015638078.1
SEG:seg:::::
Description
Similar to heavy-metal-associated domain-containing protein. (Os05t0337400-01)
Coordinates
chr5:-:15770656..15773664
Molecular Weight (calculated)
16946.1 Da
IEP (calculated)
4.154
GRAVY (calculated)
0.084
Length
164 amino acids
Sequence
(BLAST)
001: MMMTMSSPAA TACLPASPSL GPRSLRLLRG ALARRGSRRL GVVRAASAEV AAPDAAAAAP GYTSDSLILY FKAEGTMEER AIPKITQALE GVEGVSDLEV
101: LIEEGIGSVV LTKETTVQAT GVASNLVEAI QGAGFKLQTL SLSFDDFNED AATVAGEDDD QATE
Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)
001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV
Arabidopsis Description
AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.