CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY52823
CDY65018
CDY65649
CDY67513

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	CDY52823	AT3G50560.1	21798944
AT5G14910.1	CDY65018	AT3G50560.1	21798944
AT5G14910.1	CDY65649	AT3G50560.1	21798944
AT5G14910.1	CDY67513	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78599	Canola	plastid	91.12	95.66
Bra006272.1-P	Field mustard	plastid	35.74	95.05
CDX85578	Canola	plastid	30.79	84.18
AT5G14910.1	Thale cress	plastid	30.58	83.15
CDX91016	Canola	plastid	29.34	82.08
VIT_14s0066g01780.t01	Wine grape	plastid	18.59	49.18
KRH18591	Soybean	plastid	17.77	46.49
PGSC0003DMT400001367	Potato	plastid	17.77	46.24
Solyc02g087150.2.1	Tomato	plastid	17.77	46.24
GSMUA_Achr8P09820_001	Banana	plastid	18.18	45.83
KRG93395	Soybean	nucleus, plastid	17.36	45.65
EES05886	Sorghum	plastid	13.43	41.67
Zm00001d038047_P001	Maize	plastid	13.22	39.75
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	13.43	39.63
HORVU1Hr1G064750.1	Barley	plastid	13.02	37.06
TraesCS1B01G270000.1	Wheat	plastid	12.6	35.88
TraesCS1D01G259500.1	Wheat	plastid	12.81	35.63
TraesCS1A01G259700.2	Wheat	plastid	12.19	29.8

Protein Annotations

MapMan:11.10.2.1.1	MapMan:17.7.2.3.3	Gene3D:3.30.70.100	GO:A0A078C0Y9	EnsemblPlants:CDX70580	ProteinID:CDX70580
ProteinID:CDX70580.1	InterPro:GASA	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00140421001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF02704	PRINTS:PR01217	PFscan:PS50846	SUPFAM:SSF55008	UniParc:UPI0004EEC77F	SEG:seg

Description

BnaC03g06640D

Coordinates

chrLK031791:+:1091960..1096316

Molecular Weight (calculated)

51666.0 Da

IEP (calculated)

10.288

GRAVY (calculated)

-0.379

Length

484 amino acids

Sequence
(BLAST)

001: MASIAASPSF HSLSTFKSPN LSSTHLLPLS KNLTFRTRPI GNSRVCSFSA FTKQSRLGLM KLSCLGEGGG EDGVAIADEE QQQQQQQETV SVPVSPSDML
101: TMFFQADGTL NEAAIPNVTK ALQDIDGVSN LKVQVSEGVA VVELSKQTTV QATGVASSLV ETIQGAGFKL QTLNLSFEDE DEHKRPLLFN MRLHHFLTSH
201: RMALSLLLVF TFLQVFTNVV SAASKEESNA LVSLPTSPTS PAIKPPSPSY KPPSFPTTPI KPPTITPPVK PPTTPVPPTS PPTYKPPTVK PPTTTPVKPP
301: PVQPPYKPPT PPVKPPTLSP VKPPPAYKPP TPTVKPPTTP SVQPPMYKPP TPPVKPPTIP PVKPPTAPVK PTPIPPYKAP PVKPTPPPPA KPPVNPIPSP
401: PVNAPPVKPP SKPPTPPPVR PRINCVSLCG TRCGQHSRKN VCMRACVTCC YRCKCVPPGT YGNKEKCGAC YVNMKTRGGR PKCP

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.