Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G416800.1 | Wheat | nucleus | 90.75 | 91.96 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 87.22 | 87.61 |
| Os06t0698748-02 | Rice | nucleus | 50.22 | 50.0 |
| EER88891 | Sorghum | nucleus | 47.14 | 48.64 |
| Zm00001d014648_P001 | Maize | nucleus | 36.56 | 45.6 |
| Zm00001d036499_P001 | Maize | nucleus | 42.29 | 44.24 |
| CDY68667 | Canola | cytosol | 22.03 | 33.33 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 36.12 | 32.67 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 31.72 | 32.58 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 33.04 | 32.19 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 29.52 | 29.78 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 33.48 | 27.54 |
| Bra031516.1-P | Field mustard | nucleus | 23.35 | 25.85 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 19.38 | 25.58 |
| PGSC0003DMT400086234 | Potato | nucleus | 19.38 | 25.0 |
| Solyc08g068970.2.1 | Tomato | nucleus | 19.38 | 24.86 |
| Bra024004.1-P | Field mustard | nucleus | 23.35 | 24.65 |
| Bra010233.1-P | Field mustard | nucleus | 23.35 | 24.09 |
| CDY23302 | Canola | nucleus | 23.35 | 24.09 |
| AT2G24550.1 | Thale cress | nucleus | 25.99 | 24.08 |
| Bra020475.1-P | Field mustard | nucleus | 22.91 | 24.07 |
| Bra032085.1-P | Field mustard | nucleus | 27.31 | 24.03 |
| CDX72307 | Canola | nucleus | 22.47 | 23.83 |
| CDY13436 | Canola | nucleus | 22.47 | 23.83 |
| Bra007841.1-P | Field mustard | nucleus | 25.55 | 23.77 |
| CDY05462 | Canola | nucleus | 22.47 | 23.72 |
| CDY36435 | Canola | nucleus | 22.91 | 23.64 |
| CDY45582 | Canola | nucleus | 25.99 | 23.41 |
| CDY05394 | Canola | nucleus | 22.47 | 23.29 |
| CDY20324 | Canola | nucleus | 26.43 | 23.26 |
| KRH61944 | Soybean | nucleus | 25.99 | 23.23 |
| AT4G31510.1 | Thale cress | nucleus | 21.59 | 22.9 |
| CDX76805 | Canola | nucleus | 24.23 | 22.54 |
| KRH52604 | Soybean | nucleus | 24.67 | 22.22 |
| CDX87106 | Canola | nucleus | 22.47 | 22.17 |
| CDX88142 | Canola | nucleus | 21.59 | 21.59 |
| Bra009802.1-P | Field mustard | nucleus | 21.59 | 21.59 |
| Bra036527.1-P | Field mustard | nucleus | 21.59 | 21.4 |
| CDY19822 | Canola | nucleus | 21.59 | 21.21 |
| CDY55465 | Canola | nucleus | 21.15 | 20.51 |
| AT5G24890.1 | Thale cress | nucleus | 20.26 | 19.17 |
| KRH04949 | Soybean | extracellular, vacuole | 23.35 | 16.51 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G424800.1 | EnsemblPlantsGene:TraesCS7A01G424800 | ncoils:Coil | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF3 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:617948845..617949716
Molecular Weight (calculated)
23637.4 Da
IEP (calculated)
4.542
GRAVY (calculated)
-0.463
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVAAAAAA AVGPAPVAPS PAAPYGMCGG GGARKRKDVV HYQEEEEEEE VAAVQGARLG GEGHGLFVLE TVEEEEEREA EAAAEAENER SSIGPVSEGD
101: EEEGGEVESA RETPWQRRTK RTGGLASLDA LDDALPIKRG LSSFFSGKSR SFANLQDVAV AGTTSSKDVL AKPENPFNKR RRILRCCSIR RVSSTSLTAL
201: PPFLPPEPSF NIGNDGVING GSGGGSG
101: EEEGGEVESA RETPWQRRTK RTGGLASLDA LDDALPIKRG LSSFFSGKSR SFANLQDVAV AGTTSSKDVL AKPENPFNKR RRILRCCSIR RVSSTSLTAL
201: PPFLPPEPSF NIGNDGVING GSGGGSG
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.