Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014648_P001 | Maize | nucleus | 47.93 | 57.14 |
| EER88891 | Sorghum | nucleus | 51.61 | 50.91 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 44.24 | 42.29 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 43.32 | 41.96 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 42.86 | 41.15 |
| Os06t0698748-02 | Rice | nucleus | 40.09 | 38.16 |
| CDY68667 | Canola | cytosol | 23.04 | 33.33 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 32.26 | 31.67 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 32.26 | 30.04 |
| Zm00001d031545_P001 | Maize | nucleus | 34.56 | 27.57 |
| Zm00001d021006_P001 | Maize | nucleus | 32.26 | 27.13 |
| Zm00001d006059_P001 | Maize | nucleus | 31.8 | 26.34 |
| Zm00001d049768_P001 | Maize | nucleus | 30.41 | 25.38 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 25.81 | 24.89 |
| AT4G31510.1 | Thale cress | nucleus | 23.96 | 24.3 |
| CDX72307 | Canola | nucleus | 23.5 | 23.83 |
| Bra007841.1-P | Field mustard | nucleus | 26.73 | 23.77 |
| CDX76805 | Canola | nucleus | 26.27 | 23.36 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 18.43 | 23.26 |
| Bra020475.1-P | Field mustard | nucleus | 23.04 | 23.15 |
| Bra036527.1-P | Field mustard | nucleus | 24.42 | 23.14 |
| CDX87106 | Canola | nucleus | 24.42 | 23.04 |
| CDY19822 | Canola | nucleus | 24.42 | 22.94 |
| Bra031516.1-P | Field mustard | nucleus | 21.66 | 22.93 |
| CDY13436 | Canola | nucleus | 22.58 | 22.9 |
| CDY05394 | Canola | nucleus | 23.04 | 22.83 |
| CDY05462 | Canola | nucleus | 22.58 | 22.79 |
| Bra024004.1-P | Field mustard | nucleus | 22.58 | 22.79 |
| PGSC0003DMT400086234 | Potato | nucleus | 18.43 | 22.73 |
| KRH52604 | Soybean | nucleus | 25.81 | 22.22 |
| CDY45582 | Canola | nucleus | 25.35 | 21.83 |
| Bra010233.1-P | Field mustard | nucleus | 22.12 | 21.82 |
| CDY23302 | Canola | nucleus | 22.12 | 21.82 |
| AT2G24550.1 | Thale cress | nucleus | 24.42 | 21.63 |
| CDX88142 | Canola | nucleus | 22.58 | 21.59 |
| Bra009802.1-P | Field mustard | nucleus | 22.58 | 21.59 |
| Solyc08g068970.2.1 | Tomato | nucleus | 17.51 | 21.47 |
| CDY55465 | Canola | nucleus | 23.04 | 21.37 |
| Bra032085.1-P | Field mustard | nucleus | 25.35 | 21.32 |
| CDY20324 | Canola | nucleus | 24.88 | 20.93 |
| KRH61944 | Soybean | nucleus | 24.42 | 20.87 |
| AT5G24890.1 | Thale cress | nucleus | 22.58 | 20.42 |
| CDY36435 | Canola | nucleus | 20.28 | 20.0 |
| KRH04949 | Soybean | extracellular, vacuole | 22.58 | 15.26 |
Protein Annotations
| EnsemblPlants:Zm00001d036499_P001 | EnsemblPlants:Zm00001d036499_T001 | EnsemblPlantsGene:Zm00001d036499 | EntrezGene:103629595 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF3 |
| ProteinID:AQK81180.1 | SEG:seg | UniParc:UPI000221A273 | UniProt:A0A1D6LNR7 | MapMan:35.2 | : |
Description
oligopeptide transporter-like protein
Coordinates
chr6:-:90643484..90644271
Molecular Weight (calculated)
22531.8 Da
IEP (calculated)
4.677
GRAVY (calculated)
-0.612
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVAAVGPG AAVAAYGHGH GHGQPLCGGG ARKRKDVRDH EVGLPGSDGR AAARRGAGLF VLETVEEEEE EEGADAERSS SVGAASEDDA EEEEDGDGDE
101: VDSGGTRWTA GRRRRREGGA LEAAMDMGAL DDALPIKRGL SSFFSGRSRS FANLLDAASA VGSARDLAKP ENPFNKRRRV LRCCSVVRRA ASTTSLAALP
201: PIAGDDDNDD DGRSVPS
101: VDSGGTRWTA GRRRRREGGA LEAAMDMGAL DDALPIKRGL SSFFSGRSRS FANLLDAASA VGSARDLAKP ENPFNKRRRV LRCCSVVRRA ASTTSLAALP
201: PIAGDDDNDD DGRSVPS
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.