Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006059_P001 | Maize | nucleus | 72.48 | 71.37 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 64.73 | 67.61 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 64.34 | 67.21 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 65.12 | 66.93 |
| Os09t0499000-01 | Rice | nucleus | 58.91 | 58.69 |
| Zm00001d049768_P001 | Maize | nucleus | 48.84 | 48.46 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 60.47 | 47.42 |
| Zm00001d031545_P001 | Maize | nucleus | 48.45 | 45.96 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 39.15 | 45.7 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 37.98 | 43.56 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 37.6 | 41.63 |
| Zm00001d014648_P001 | Maize | nucleus | 24.42 | 34.62 |
| Zm00001d036499_P001 | Maize | nucleus | 27.13 | 32.26 |
| CDY68667 | Canola | cytosol | 18.6 | 32.0 |
| Solyc08g068970.2.1 | Tomato | nucleus | 20.16 | 29.38 |
| KRH52604 | Soybean | nucleus | 28.68 | 29.37 |
| KRH61944 | Soybean | nucleus | 28.68 | 29.13 |
| CDY05462 | Canola | nucleus | 23.64 | 28.37 |
| Bra020475.1-P | Field mustard | nucleus | 23.64 | 28.24 |
| CDY19822 | Canola | nucleus | 25.19 | 28.14 |
| Bra036527.1-P | Field mustard | nucleus | 24.81 | 27.95 |
| PGSC0003DMT400086234 | Potato | nucleus | 18.99 | 27.84 |
| AT4G31510.1 | Thale cress | nucleus | 22.87 | 27.57 |
| AT5G24890.1 | Thale cress | nucleus | 25.58 | 27.5 |
| CDY05394 | Canola | nucleus | 23.26 | 27.4 |
| CDX87106 | Canola | nucleus | 24.42 | 27.39 |
| Bra007841.1-P | Field mustard | nucleus | 25.58 | 27.05 |
| Bra009802.1-P | Field mustard | nucleus | 23.64 | 26.87 |
| CDX88142 | Canola | nucleus | 23.64 | 26.87 |
| CDX76805 | Canola | nucleus | 25.19 | 26.64 |
| AT2G24550.1 | Thale cress | nucleus | 25.19 | 26.53 |
| CDX72307 | Canola | nucleus | 21.71 | 26.17 |
| CDY55465 | Canola | nucleus | 23.64 | 26.07 |
| CDY45582 | Canola | nucleus | 25.19 | 25.79 |
| CDY13436 | Canola | nucleus | 21.32 | 25.7 |
| Bra032085.1-P | Field mustard | nucleus | 25.58 | 25.58 |
| Bra024004.1-P | Field mustard | nucleus | 21.32 | 25.58 |
| CDY20324 | Canola | nucleus | 25.19 | 25.19 |
| Bra031516.1-P | Field mustard | nucleus | 19.77 | 24.88 |
| Bra010233.1-P | Field mustard | nucleus | 20.93 | 24.55 |
| CDY23302 | Canola | nucleus | 20.93 | 24.55 |
| CDY36435 | Canola | nucleus | 20.54 | 24.09 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 15.89 | 23.84 |
| KRH04949 | Soybean | extracellular, vacuole | 27.13 | 21.81 |
Protein Annotations
| EnsemblPlants:Zm00001d021006_P001 | EnsemblPlants:Zm00001d021006_T001 | EnsemblPlantsGene:Zm00001d021006 | EntrezGene:100282473 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF4 |
| ProteinID:ONM56123.1 | SEG:seg | UniParc:UPI0002220A42 | UniProt:A0A1D6I7U9 | MapMan:35.2 | : |
Description
MTD1
Coordinates
chr7:-:140181294..140182626
Molecular Weight (calculated)
27024.9 Da
IEP (calculated)
4.540
GRAVY (calculated)
-0.647
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAVAEVRP PYGFPGSGKG SGGGYGKEAH LAAAGKRRSD GFFIEEEEVE EDVLTDNSSI GAPSPSGSSI GENSSSEAGG DDGEEEVESK LKEGDVLGCL
101: DALEDSLPIK KGLSSFYSGK SKSFTSLAEA TAAAAAVKEV LAKPEKPFNK RRRILANWSR RASCSSLATA TYLPQLLGPD HAVAEGDEGE EDDSDDDVEY
201: SQVPHHGKNV RDAPTSPLPL PRLGGVGSMQ RRNGLGSFRS PRSFSLSDLR NSSADGSD
101: DALEDSLPIK KGLSSFYSGK SKSFTSLAEA TAAAAAVKEV LAKPEKPFNK RRRILANWSR RASCSSLATA TYLPQLLGPD HAVAEGDEGE EDDSDDDVEY
201: SQVPHHGKNV RDAPTSPLPL PRLGGVGSMQ RRNGLGSFRS PRSFSLSDLR NSSADGSD
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.