Factsheet for Bra007841.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra013872.1-P
Bra018126.1-P
Bra038059.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24550.1	Bra000393.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra004928.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra039324.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G24550.1	Bra038059.1-P	AT4G15930.1	21798944
AT2G24550.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76805	Canola	nucleus	95.9	95.9
Bra032085.1-P	Field mustard	nucleus	71.31	67.44
AT2G24550.1	Thale cress	nucleus	66.8	66.53
Bra010233.1-P	Field mustard	nucleus	43.03	47.73
Bra031516.1-P	Field mustard	nucleus	37.7	44.88
Bra024004.1-P	Field mustard	nucleus	37.7	42.79
Bra036527.1-P	Field mustard	nucleus	39.75	42.36
Bra020475.1-P	Field mustard	nucleus	36.48	41.2
Bra009802.1-P	Field mustard	nucleus	36.89	39.65
VIT_01s0113g00410.t01	Wine grape	mitochondrion, nucleus	23.77	33.72
KRH61944	Soybean	nucleus	32.38	31.1
KRH52604	Soybean	nucleus	31.56	30.56
EER88891	Sorghum	nucleus	26.64	29.55
Solyc08g068970.2.1	Tomato	nucleus	21.31	29.38
GSMUA_Achr3P05640_001	Banana	nucleus	27.87	29.18
GSMUA_Achr7P15940_001	Banana	nucleus	25.41	28.05
Zm00001d014648_P001	Maize	nucleus	20.9	28.02
GSMUA_Achr9P13850_001	Banana	nucleus	25.41	27.56
PGSC0003DMT400086234	Potato	nucleus	19.67	27.27
Os06t0698748-02	Rice	nucleus	25.0	26.75
Zm00001d036499_P001	Maize	nucleus	23.77	26.73
TraesCS7B01G325100.1	Wheat	nucleus	24.59	26.55
EER99130	Sorghum	nucleus	27.46	26.07
TraesCS7D01G416800.1	Wheat	nucleus	23.77	25.89
Zm00001d021006_P001	Maize	nucleus	27.05	25.58
TraesCS7A01G424800.1	Wheat	nucleus	23.77	25.55
Os08t0516900-01	Rice	nucleus, plasma membrane	27.05	25.29
TraesCS5D01G284800.1	Wheat	nucleus	25.41	25.1
TraesCS5B01G277200.1	Wheat	nucleus	25.41	25.1
TraesCS5A01G277500.1	Wheat	nucleus	25.41	24.7
Os09t0499000-01	Rice	nucleus	25.41	23.94
HORVU7Hr1G052580.1	Barley	nucleus	26.64	23.72
KRH04949	Soybean	extracellular, vacuole	31.15	23.68
TraesCS7A01G254500.1	Wheat	mitochondrion, nucleus	26.64	23.55
Zm00001d006059_P001	Maize	nucleus	25.0	23.28
TraesCS7D01G253100.1	Wheat	mitochondrion, nucleus	25.82	22.91
TraesCS7B01G150700.1	Wheat	mitochondrion, nucleus	25.82	22.74
KXG25581	Sorghum	nucleus	24.59	21.58
Zm00001d031545_P001	Maize	nucleus	23.36	20.96
Zm00001d049768_P001	Maize	nucleus	22.13	20.77
HORVU5Hr1G075200.2	Barley	golgi, plastid	24.18	17.93

Protein Annotations

EnsemblPlants:Bra007841.1	EnsemblPlants:Bra007841.1-P	EnsemblPlantsGene:Bra007841	PANTHER:PTHR33172	PANTHER:PTHR33172:SF15	SEG:seg
UniParc:UPI0002542D6E	UniProt:M4CUE6	MapMan:35.2	:	:	:

Description

AT2G24550 (E=3e-065) | unknown protein

Coordinates

chrA09:+:31206911..31207786

Molecular Weight (calculated)

26323.4 Da

IEP (calculated)

4.342

GRAVY (calculated)

-0.682

Length

244 amino acids

Sequence
(BLAST)

001: MEVMVGSSFG IGMAACVRDR GGVSAQDKAV PPPALFMADE SGRGGGSQIG LASRLGLSMS NKSAEESSED SSSSIGEISD NEEEDEDDDV SSQGEGGALD
101: SFSSSLEDSL PIKRGLSNHY VGKSKSFGNL MESSNINAKD LEKVENPFNK KRRLIIANKL RSRGRSMSVS SFYTWQNPNS TPLLALQEPN KVDADGDNQT
201: ISLFERRKMM MKSKKDLMAQ TQSCFCLSSL QEEDDDGGSC DDNE

Best Arabidopsis Sequence Match ( AT2G24550.1 )
(BLAST)

001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE

Arabidopsis Description

At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.