Factsheet for Bra032085.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra013872.1-P
Bra018126.1-P
Bra038059.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24550.1	Bra000393.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra004928.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra039324.1-P	AT2G45660.1	21798944
AT2G24550.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G24550.1	Bra038059.1-P	AT4G15930.1	21798944
AT2G24550.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45582	Canola	nucleus	93.8	96.03
CDY20324	Canola	nucleus	87.21	87.21
Bra007841.1-P	Field mustard	nucleus	67.44	71.31
AT2G24550.1	Thale cress	nucleus	66.28	69.8
Bra010233.1-P	Field mustard	nucleus	44.96	52.73
Bra031516.1-P	Field mustard	nucleus	38.37	48.29
Bra024004.1-P	Field mustard	nucleus	39.53	47.44
Bra036527.1-P	Field mustard	nucleus	36.82	41.48
Bra009802.1-P	Field mustard	nucleus	36.43	41.41
Bra020475.1-P	Field mustard	nucleus	34.5	41.2
VIT_01s0113g00410.t01	Wine grape	mitochondrion, nucleus	24.81	37.21
KRH61944	Soybean	nucleus	32.17	32.68
KRH52604	Soybean	nucleus	31.4	32.14
Solyc08g068970.2.1	Tomato	nucleus	20.54	29.94
GSMUA_Achr3P05640_001	Banana	nucleus	26.74	29.61
EER88891	Sorghum	nucleus	25.19	29.55
GSMUA_Achr9P13850_001	Banana	nucleus	25.19	28.89
Zm00001d014648_P001	Maize	nucleus	20.16	28.57
PGSC0003DMT400086234	Potato	nucleus	19.38	28.41
Os08t0516900-01	Rice	nucleus, plasma membrane	28.68	28.35
TraesCS7D01G416800.1	Wheat	nucleus	24.42	28.12
GSMUA_Achr7P15940_001	Banana	nucleus	24.03	28.05
TraesCS7B01G325100.1	Wheat	nucleus	24.03	27.43
TraesCS7A01G424800.1	Wheat	nucleus	24.03	27.31
TraesCS5D01G284800.1	Wheat	nucleus	25.97	27.13
TraesCS5B01G277200.1	Wheat	nucleus	25.97	27.13
EER99130	Sorghum	nucleus	26.74	26.85
Os06t0698748-02	Rice	nucleus	23.64	26.75
TraesCS5A01G277500.1	Wheat	nucleus	25.19	25.9
TraesCS7D01G253100.1	Wheat	mitochondrion, nucleus	27.52	25.82
TraesCS7A01G254500.1	Wheat	mitochondrion, nucleus	27.52	25.72
TraesCS7B01G150700.1	Wheat	mitochondrion, nucleus	27.52	25.63
Zm00001d021006_P001	Maize	nucleus	25.58	25.58
HORVU7Hr1G052580.1	Barley	nucleus	27.13	25.55
Zm00001d036499_P001	Maize	nucleus	21.32	25.35
Zm00001d006059_P001	Maize	nucleus	25.19	24.81
Os09t0499000-01	Rice	nucleus	24.81	24.71
Zm00001d049768_P001	Maize	nucleus	24.81	24.62
KXG25581	Sorghum	nucleus	26.36	24.46
Zm00001d031545_P001	Maize	nucleus	25.19	23.9
KRH04949	Soybean	extracellular, vacuole	28.29	22.74
HORVU5Hr1G075200.2	Barley	golgi, plastid	24.42	19.15

Protein Annotations

EnsemblPlants:Bra032085.1	EnsemblPlants:Bra032085.1-P	EnsemblPlantsGene:Bra032085	PANTHER:PTHR33172	PANTHER:PTHR33172:SF15	SEG:seg
UniParc:UPI0002544B64	UniProt:M4ETF4	MapMan:35.2	:	:	:

Description

AT2G24550 (E=3e-050) | unknown protein

Coordinates

chrA04:-:10980626..10981587

Molecular Weight (calculated)

28383.8 Da

IEP (calculated)

4.620

GRAVY (calculated)

-0.827

Length

258 amino acids

Sequence
(BLAST)

001: MEVMVGSPFG IGMAACVRDR TSVSAQDKSV PAAALFSADE SGRGGSQIGL ASRIGLRMNK RSPEESPEES SEDSVSSIGE CSENEEEEED DAVSFQRGGG
101: GGGTLVSFTS SLEDSLPIKR GLSNHYVGKS KSFGNLMEQT NINAKDLEKG ENPFNKRRRL LIANKLRSRG RSMSVSNFYS WQNPNSMSLL AVQEHNEVNH
201: HNDDDYEENE GGDHQTMKLL EKRNMLMKNK RDLMAQTRSC FCLSSLQEDD DEGGVDNE

Best Arabidopsis Sequence Match ( AT2G24550.1 )
(BLAST)

001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE

Arabidopsis Description

At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.