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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 2
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45660.1 Bra011021.1-P AT1G26310.1 11439126
AT2G45660.1 Bra011021.1-P AT1G26310.1 15805477
AT2G45660.1 Bra004007.1-P AT1G69120.1 11439126
AT2G45660.1 Bra004361.1-P AT1G69120.1 11439126
AT2G45660.1 Bra038326.1-P AT1G69120.1 11439126
AT2G45660.1 Bra004007.1-P AT1G69120.1 15805477
AT2G45660.1 Bra004361.1-P AT1G69120.1 15805477
AT2G45660.1 Bra038326.1-P AT1G69120.1 15805477
AT2G45660.1 Bra004007.1-P AT1G69120.1 21798944
AT2G45660.1 Bra004361.1-P AT1G69120.1 21798944
AT2G45660.1 Bra038326.1-P AT1G69120.1 21798944
AT2G45660.1 Bra003919.1-P AT1G71692.1 15805477
AT2G45660.1 Bra007972.1-P AT1G71692.1 15805477
AT2G45660.1 Bra016128.1-P AT1G71692.1 15805477
AT2G45660.1 Bra016129.1-P AT1G71692.1 15805477
AT2G45660.1 Bra017376.1-P AT2G03710.1 15805477
AT2G45660.1 Bra025126.1-P AT2G03710.1 15805477
AT2G45660.1 Bra026543.1-P AT2G03710.1 15805477
AT2G45660.1 Bra024480.1-P AT2G18040.1 20129060
AT2G45660.1 Bra039913.1-P AT2G18040.1 20129060
AT2G45660.1 Bra030228.1-P AT2G22540.1 15805477
AT2G45660.1 Bra038511.1-P AT2G22540.1 15805477
AT2G45660.1 Bra000392.1-P AT2G45650.1 15805477
AT2G45660.1 Bra004927.1-P AT2G45650.1 15805477
AT2G45660.1 Bra000393.1-P AT2G45660.1 15805477
AT2G45660.1 Bra004928.1-P AT2G45660.1 15805477
AT2G45660.1 Bra039324.1-P AT2G45660.1 15805477
AT2G45660.1 Bra021470.1-P AT3G02310.1 15805477
AT2G45660.1 Bra039170.1-P AT3G02310.1 15805477
AT2G45660.1 Bra007056.1-P AT3G54220.1 19228333
AT2G45660.1 Bra011509.1-P AT3G57230.1 15805477
AT2G45660.1 Bra017638.1-P AT3G57230.1 15805477
AT2G45660.1 Bra014454.1-P AT3G61120.1 15805477
AT2G45660.1 Bra029424.1-P AT4G11880.1 15805477
AT2G45660.1 Bra019343.1-P AT4G22950.1 15805477
AT2G45660.1 Bra020826.1-P AT4G22950.1 15805477
AT2G45660.1 Bra019221.1-P AT4G24540.1 15805477
AT2G45660.1 Bra010623.1-P AT4G37940.1 15805477
AT2G45660.1 Bra011797.1-P AT4G37940.1 15805477
AT2G45660.1 Bra009440.1-P AT5G04600.1 21798944
AT2G45660.1 Bra028783.1-P AT5G04600.1 21798944
AT2G45660.1 Bra002403.1-P AT5G22290.1 21798944
AT2G45660.1 Bra006619.1-P AT5G22290.1 21798944
AT2G45660.1 Bra020182.1-P AT5G22290.1 21798944
AT2G45660.1 Bra017504.1-P AT5G47100.1 21798944
AT2G45660.1 Bra022104.1-P AT5G47100.1 21798944
AT2G45660.1 Bra017476.1-P AT5G47570.1 21798944
AT2G45660.1 Bra022143.1-P AT5G47570.1 21798944
AT2G45660.1 Bra024933.1-P AT5G47570.1 21798944
AT2G45660.1 Bra012997.1-P AT5G60910.1 15805477
AT2G45660.1 Bra029347.1-P AT5G60910.1 15805477
AT2G45660.1 Bra035952.1-P AT5G60910.1 15805477
AT2G45660.1 Bra012997.1-P AT5G60910.1 21798944
AT2G45660.1 Bra029347.1-P AT5G60910.1 21798944
AT2G45660.1 Bra035952.1-P AT5G60910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74755 Canola nucleus 100.0 100.0
CDY69077 Canola nucleus 98.59 98.59
AT2G45660.1 Thale cress nucleus 95.77 95.33
Bra000393.1-P Field mustard nucleus 94.37 94.37
Bra039324.1-P Field mustard nucleus 93.9 93.9
Solyc10g017640.1.1 Tomato nucleus 23.47 81.97
TraesCS1B01G214600.1 Wheat nucleus 23.47 80.65
Zm00001d047355_P001 Maize nucleus 25.82 73.33
KRH00625 Soybean nucleus 70.42 71.77
KRH40554 Soybean nucleus 69.48 70.14
TraesCS7D01G037000.1 Wheat cytosol 18.31 63.93
Bra020826.1-P Field mustard nucleus 43.19 63.01
PGSC0003DMT400026576 Potato nucleus 61.03 60.75
PGSC0003DMT400000028 Potato nucleus 62.91 59.82
GSMUA_Achr2P11820_001 Banana nucleus 38.5 58.99
Bra029424.1-P Field mustard nucleus 47.42 58.38
KRH65189 Soybean nucleus 63.85 57.38
Bra019343.1-P Field mustard nucleus 57.75 56.16
GSMUA_Achr1P03630_001 Banana nucleus 55.4 55.92
Zm00001d042315_P001 Maize nucleus 18.31 55.71
GSMUA_Achr5P10250_001 Banana nucleus 54.46 53.7
Bra029281.1-P Field mustard nucleus 52.58 53.59
TraesCS1B01G214500.1 Wheat nucleus 53.05 51.83
Zm00001d027425_P001 Maize nucleus 53.99 50.44
TraesCS1D01G203300.2 Wheat nucleus 54.46 50.43
Zm00001d048474_P001 Maize nucleus 54.93 50.43
Os03t0122600-01 Rice nucleus 53.99 50.0
TraesCS5A01G515500.1 Wheat nucleus 51.17 49.55
Bra028282.1-P Field mustard nucleus 46.95 49.51
OQU93352 Sorghum nucleus 53.99 49.36
HORVU1Hr1G051660.10 Barley nucleus 35.68 49.35
TraesCS1A01G199600.2 Wheat nucleus 53.05 49.13
TraesCS4B01G346700.1 Wheat nucleus 51.17 49.1
KXG39016 Sorghum nucleus 51.64 48.67
TraesCS4D01G341700.1 Wheat nucleus 50.7 48.65
TraesCS1D01G203400.1 Wheat nucleus 52.58 48.48
TraesCS1A01G199900.1 Wheat nucleus 51.17 47.81
Bra029154.1-P Field mustard nucleus 48.36 47.03
Bra029314.1-P Field mustard nucleus 40.85 46.52
Bra028283.1-P Field mustard nucleus 42.72 45.73
Os10t0536100-01 Rice nucleus 49.77 45.49
Zm00001d031625_P001 Maize nucleus 16.9 45.0
Bra029155.1-P Field mustard nucleus 44.13 44.98
Bra012957.1-P Field mustard nucleus 44.13 44.55
Bra013891.1-P Field mustard nucleus 38.97 43.92
TraesCS6B01G017900.1 Wheat nucleus 51.17 42.25
TraesCS6D01G014600.1 Wheat nucleus 51.17 42.08
HORVU6Hr1G002270.1 Barley mitochondrion, nucleus 21.13 42.06
TraesCS6A01G011700.1 Wheat nucleus 51.17 41.6
HORVU4Hr1G085450.1 Barley nucleus 18.78 41.24
Os06t0108500-01 Rice nucleus 40.85 40.85
HORVU6Hr1G002330.14 Barley nucleus 36.62 40.62
Bra035907.1-P Field mustard nucleus 51.64 40.44
TraesCS3A01G434700.1 Wheat nucleus 19.25 40.2
Bra010465.1-P Field mustard nucleus 34.74 39.57
HORVU3Hr1G095240.2 Barley nucleus 28.17 37.74
TraesCS3D01G428000.1 Wheat nucleus 28.17 37.74
HORVU3Hr1G095200.4 Barley nucleus 28.64 36.53
TraesCS3A01G435000.1 Wheat nucleus 28.64 36.53
TraesCS3B01G470000.1 Wheat nucleus 28.64 36.53
TraesCS3D01G427900.1 Wheat nucleus 28.64 36.53
HORVU3Hr1G095080.3 Barley plastid 19.25 35.34
TraesCS3A01G434400.1 Wheat nucleus 27.7 35.33
TraesCS4B01G351500.1 Wheat nucleus 26.76 34.76
TraesCS3B01G469700.1 Wheat nucleus 27.23 34.73
OQU86329 Sorghum nucleus 27.7 34.5
Zm00001d047356_P002 Maize nucleus 19.25 34.45
TraesCS3A01G434900.1 Wheat nucleus 26.76 34.13
TraesCS3D01G427700.1 Wheat mitochondrion, nucleus 26.29 33.73
Zm00001d039913_P002 Maize nucleus 26.76 32.76
EES01980 Sorghum nucleus 24.88 32.52
Os01t0922800-01 Rice nucleus 24.88 32.32
TraesCS3A01G432900.1 Wheat mitochondrion, nucleus 24.88 31.93
Os08t0531900-01 Rice nucleus 27.23 31.69
HORVU4Hr1G085370.1 Barley nucleus 15.96 31.48
HORVU7Hr1G054390.1 Barley nucleus 21.6 29.87
TraesCS5A01G520200.1 Wheat nucleus, plastid 27.23 28.71
TraesCS4D01G346300.1 Wheat nucleus 27.7 28.5
HORVU7Hr1G054320.2 Barley nucleus 24.88 27.32
TraesCS7D01G261900.1 Wheat nucleus 26.29 25.57
TraesCS7A01G260900.1 Wheat nucleus 24.41 25.37
TraesCS7B01G158900.1 Wheat nucleus 25.82 25.35
KXG25532 Sorghum nucleus, plastid 23.94 20.32
HORVU3Hr1G095090.1 Barley cytosol, mitochondrion, nucleus 28.64 18.1
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ProteinID:AAP20423ProteinID:AAP20423.1EMBL:AY257541EnsemblPlantsGene:Bra004928
EnsemblPlants:Bra004928.1EnsemblPlants:Bra004928.1-Pncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100
InterPro:IPR002487InterPro:IPR036879UniProt:M4CL42InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF341
SMART:SM00432SUPFAM:SSF55455InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0002547FF0
SEG:seg:::::
Description
AT2G45660 (E=6e-082) AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20); transcription factor
Coordinates
chrA05:-:2530305..2532747
Molecular Weight (calculated)
24401.3 Da
IEP (calculated)
9.654
GRAVY (calculated)
-0.814
Length
213 amino acids
Sequence
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KAKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENLQHL KHEAANMMKK
101: IEQLEASKRK LLGEGIGSCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENKKLTEK WGSHEIEVWS NKNQESGKGD EESSPSSEVE
201: TELFIGLPCS SRK
Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.