Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g017640.1.1 | Tomato | nucleus | 17.84 | 62.3 |
| KRH48297 | Soybean | nucleus | 23.0 | 55.06 |
| Os03t0834466-00 | Rice | nucleus | 14.55 | 47.69 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 23.0 | 45.79 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 15.02 | 45.07 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 54.46 | 44.96 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 53.99 | 44.4 |
| KRH00625 | Soybean | nucleus | 42.72 | 43.54 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 53.52 | 43.51 |
| HORVU6Hr1G002330.14 | Barley | nucleus | 38.97 | 43.23 |
| KRH40554 | Soybean | nucleus | 42.72 | 43.13 |
| CDY37054 | Canola | nucleus | 41.31 | 41.31 |
| Bra039324.1-P | Field mustard | nucleus | 41.31 | 41.31 |
| Os10t0536100-01 | Rice | nucleus | 45.07 | 41.2 |
| CDY69077 | Canola | nucleus | 40.85 | 40.85 |
| CDX74755 | Canola | nucleus | 40.85 | 40.85 |
| Bra004928.1-P | Field mustard | nucleus | 40.85 | 40.85 |
| CDY27368 | Canola | nucleus | 40.38 | 40.38 |
| Os03t0122600-01 | Rice | nucleus | 43.19 | 40.0 |
| CDY53886 | Canola | nucleus | 39.91 | 39.91 |
| Bra000393.1-P | Field mustard | nucleus | 39.91 | 39.91 |
| PGSC0003DMT400026576 | Potato | nucleus | 39.91 | 39.72 |
| AT2G45660.1 | Thale cress | nucleus | 39.91 | 39.72 |
| CDY60689 | Canola | nucleus | 38.97 | 38.97 |
| PGSC0003DMT400000028 | Potato | nucleus | 40.38 | 38.39 |
| Os01t0922800-01 | Rice | nucleus | 26.76 | 34.76 |
| KRH65189 | Soybean | nucleus | 37.56 | 33.76 |
| Os08t0531900-01 | Rice | nucleus | 28.64 | 33.33 |
| KRH48299 | Soybean | nucleus | 18.78 | 29.2 |
Protein Annotations
| EntrezGene:107276241 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A0P0WS55 | ProteinID:BAS95768.1 | ncoils:Coil |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| EnsemblPlantsGene:Os06g0108500 | EnsemblPlants:Os06t0108500-01 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001C7CAA4 | RefSeq:XP_015642542.1 | SEG:seg |
Description
Similar to MIKC-type MADS-box transcription factor AGL1. (Os06t0108500-01)
Coordinates
chr6:+:494850..511404
Molecular Weight (calculated)
24260.2 Da
IEP (calculated)
10.018
GRAVY (calculated)
-0.746
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTNMKS
101: QSETLAMEID TVEAYTRKMQ GENLESCSLQ ELHGLEMQME KSLSSIRLQK QKKLMDKISQ LQQQEKILSE ENALLLDQGK VQHAPIGAPA REMNQNQHVQ
201: DIDVDTELVI GRR
101: QSETLAMEID TVEAYTRKMQ GENLESCSLQ ELHGLEMQME KSLSSIRLQK QKKLMDKISQ LQQQEKILSE ENALLLDQGK VQHAPIGAPA REMNQNQHVQ
201: DIDVDTELVI GRR
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.