Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85202 | Sorghum | nucleus | 87.08 | 87.08 |
| Zm00001d016957_P003 | Maize | nucleus | 85.83 | 85.83 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 70.0 | 68.85 |
| Os08t0431900-00 | Rice | nucleus | 42.92 | 64.78 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 61.67 | 62.98 |
| Os02t0731200-01 | Rice | nucleus | 62.5 | 62.24 |
| Os06t0347700-00 | Rice | nucleus | 37.92 | 61.9 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 60.42 | 61.44 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 62.5 | 61.22 |
| AT3G57230.1 | Thale cress | nucleus | 59.58 | 59.58 |
| CDY49287 | Canola | nucleus | 59.58 | 59.58 |
| CDX75412 | Canola | nucleus | 59.58 | 59.58 |
| Bra017638.1-P | Field mustard | nucleus | 59.58 | 59.58 |
| CDX69036 | Canola | nucleus | 59.17 | 59.17 |
| CDX72465 | Canola | nucleus | 58.75 | 58.75 |
| KRH42047 | Soybean | nucleus | 53.75 | 53.53 |
| Os04t0304400-01 | Rice | nucleus | 49.58 | 52.42 |
| Bra011509.1-P | Field mustard | nucleus | 55.0 | 45.52 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 27.08 | 43.92 |
| Os06t0162800-01 | Rice | nucleus | 35.0 | 37.33 |
| Os08t0531700-01 | Rice | nucleus | 35.42 | 34.14 |
| Os07t0605200-01 | Rice | nucleus | 35.0 | 33.73 |
| Os03t0753100-01 | Rice | nucleus | 33.33 | 33.47 |
| Os01t0886200-01 | Rice | nucleus | 36.25 | 32.83 |
| Os03t0752800-02 | Rice | nucleus | 33.33 | 32.52 |
| Os02t0682200-01 | Rice | nucleus | 33.33 | 32.0 |
| Os03t0215400-01 | Rice | nucleus | 34.17 | 31.91 |
| Os09t0507200-01 | Rice | nucleus | 32.92 | 31.85 |
| Os04t0580700-01 | Rice | nucleus | 33.33 | 31.5 |
| Os12t0207000-01 | Rice | nucleus | 35.0 | 31.11 |
| Os05t0203800-02 | Rice | nucleus | 34.58 | 30.51 |
| Os07t0108900-02 | Rice | nucleus | 33.33 | 29.96 |
| Os12t0501700-00 | Rice | nucleus | 28.75 | 29.61 |
| Os01t0201700-02 | Rice | nucleus | 33.33 | 28.99 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4329771 | EMBL:AY177696 | EMBL:AY551923 | ProteinID:BAD29571.1 |
| ProteinID:BAF09144.1 | ProteinID:BAS79407.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os02g0579600 | EnsemblPlants:Os02t0579600-00 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF263 | UniProt:Q6EP49 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0000191F84 | RefSeq:XP_015626695.1 | : | : | : |
Description
MADS BOX GENE 27Transcription factor MADS27. (Os02t0579600-00)
Coordinates
chr2:+:22294657..22301807
Molecular Weight (calculated)
27423.7 Da
IEP (calculated)
9.476
GRAVY (calculated)
-0.705
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST SMKSVIDRYG KSKDEQQAVA NPNSELKFWQ REAASLRQQL
101: HNLQENHRQL MGEDLSGLNV KELQSLENQL EISLRSVRTK KDHVLIDEIH ELNRKGSLVH QENMELYKKI SLIRQENAEL YKKIYETEGP SEVNRDSPTP
201: YNFAVIEKTN VPVQLGLSTL PQHSDAEQST APKLGLQLNP
101: HNLQENHRQL MGEDLSGLNV KELQSLENQL EISLRSVRTK KDHVLIDEIH ELNRKGSLVH QENMELYKKI SLIRQENAEL YKKIYETEGP SEVNRDSPTP
201: YNFAVIEKTN VPVQLGLSTL PQHSDAEQST APKLGLQLNP
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.