Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G176700.1 | Wheat | nucleus | 82.96 | 81.86 |
| Os02t0761000-01 | Rice | nucleus | 79.37 | 77.63 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 82.06 | 76.25 |
| EER88077 | Sorghum | nucleus | 75.78 | 75.11 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 79.82 | 73.86 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 17.49 | 61.9 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 16.59 | 60.66 |
| KRH62216 | Soybean | nucleus | 17.94 | 60.61 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 16.59 | 59.68 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 60.99 | 59.39 |
| GSMUA_Achr10P... | Banana | nucleus | 58.74 | 57.46 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 24.22 | 57.45 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 16.59 | 56.92 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 56.05 | 55.07 |
| Bra030228.1-P | Field mustard | nucleus | 56.95 | 53.81 |
| CDX89487 | Canola | nucleus | 56.5 | 53.39 |
| CDY13746 | Canola | nucleus | 56.5 | 53.39 |
| CDX76906 | Canola | nucleus | 56.05 | 52.97 |
| KRH74496 | Soybean | nucleus | 53.36 | 52.42 |
| Bra038511.1-P | Field mustard | nucleus | 56.5 | 52.28 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 56.05 | 52.08 |
| KRH69674 | Soybean | nucleus | 52.91 | 51.98 |
| AT2G22540.1 | Thale cress | nucleus | 55.61 | 51.67 |
| PGSC0003DMT400041773 | Potato | nucleus | 53.81 | 50.42 |
| PGSC0003DMT400024247 | Potato | nucleus | 52.02 | 49.36 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 16.59 | 49.33 |
| KRH42097 | Soybean | nucleus | 43.95 | 47.8 |
| CDY11019 | Canola | nucleus | 46.19 | 47.69 |
| Bra019221.1-P | Field mustard | nucleus | 46.19 | 47.69 |
| Os03t0186600-01 | Rice | nucleus | 52.91 | 47.58 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 38.12 | 47.22 |
| KRH49819 | Soybean | nucleus | 43.5 | 47.09 |
| CDY03445 | Canola | nucleus | 46.64 | 47.06 |
| KRH52935 | Soybean | nucleus | 49.33 | 47.01 |
| AT4G24540.1 | Thale cress | nucleus | 46.19 | 46.82 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 61.44 | 46.6 |
| CDX92641 | Canola | nucleus | 47.09 | 45.85 |
| Solyc11g010570.1.1 | Tomato | nucleus | 54.26 | 45.66 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 17.49 | 45.35 |
| CDY25607 | Canola | nucleus | 35.43 | 45.14 |
| Solyc04g076280.2.1 | Tomato | vacuole | 37.67 | 43.08 |
| PGSC0003DMT400083739 | Potato | nucleus | 41.26 | 41.63 |
| KRH10603 | Soybean | nucleus | 37.67 | 40.38 |
| KRH21764 | Soybean | nucleus | 36.77 | 39.81 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 32.29 | 39.34 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 53.81 | 37.5 |
| KRH10606 | Soybean | nucleus | 33.63 | 35.55 |
| Solyc01g105800.2.1 | Tomato | nucleus | 40.36 | 32.26 |
| KRH21757 | Soybean | nucleus | 34.98 | 31.45 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4340495 | EMBL:AK111859 | ProteinID:BAD35842.1 | ProteinID:BAF19063.1 |
| ProteinID:BAS96796.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os06g0217300 | EnsemblPlants:Os06t0217300-01 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF342 |
| UniProt:Q0DDL0 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00004038DD | RefSeq:XP_015641679.1 | SEG:seg | : | : | : |
Description
MADS BOX GENE 55Similar to Transcription factor MADS55. (Os06t0217300-01)
Coordinates
chr6:-:5952599..5963309
Molecular Weight (calculated)
24846.4 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.618
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS NMNEIIDKYT THSKNLGKTD KQPSIDLNLE HSKCSSLNEQ
101: LAEASLQLRQ MRGEELEGLS VEELQQMEKN LEAGLQRVLC TKDQQFMQEI SELQRKGIQL AEENMRLRDQ MPQVPTAGLA VPDTENVLTE DGQSSESVMT
201: ALNSGSSQDN DDGSDISLKL GLP
101: LAEASLQLRQ MRGEELEGLS VEELQQMEKN LEAGLQRVLC TKDQQFMQEI SELQRKGIQL AEENMRLRDQ MPQVPTAGLA VPDTENVLTE DGQSSESVMT
201: ALNSGSSQDN DDGSDISLKL GLP
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.