Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62216 | Soybean | nucleus | 24.36 | 86.36 |
| AT4G24540.1 | Thale cress | nucleus | 53.42 | 56.82 |
| Zm00001d044899_P001 | Maize | nucleus | 17.09 | 56.34 |
| Bra019221.1-P | Field mustard | nucleus | 50.0 | 54.17 |
| CDY11019 | Canola | nucleus | 50.0 | 54.17 |
| CDY03445 | Canola | nucleus | 50.85 | 53.85 |
| KRH69674 | Soybean | nucleus | 52.14 | 53.74 |
| KRH74496 | Soybean | nucleus | 51.71 | 53.3 |
| CDX92641 | Canola | nucleus | 50.43 | 51.53 |
| KRH42097 | Soybean | nucleus | 44.87 | 51.22 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 49.15 | 50.22 |
| PGSC0003DMT400024247 | Potato | nucleus | 50.43 | 50.21 |
| KRH49819 | Soybean | nucleus | 43.59 | 49.51 |
| Os06t0217300-01 | Rice | nucleus | 47.01 | 49.33 |
| Os02t0761000-01 | Rice | nucleus | 47.86 | 49.12 |
| GSMUA_Achr10P... | Banana | nucleus | 47.86 | 49.12 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 47.01 | 48.25 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 47.01 | 48.25 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 46.58 | 48.23 |
| Zm00001d018142_P001 | Maize | nucleus | 45.3 | 47.96 |
| Zm00001d052180_P001 | Maize | nucleus | 45.3 | 47.96 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 46.58 | 47.81 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 46.15 | 47.37 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 45.73 | 47.35 |
| KXG31156 | Sorghum | nucleus | 45.73 | 46.93 |
| KRH10603 | Soybean | nucleus | 41.45 | 46.63 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 45.73 | 46.52 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 45.73 | 45.73 |
| KRH21764 | Soybean | nucleus | 40.17 | 45.63 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 44.87 | 43.75 |
| EER88077 | Sorghum | nucleus | 41.45 | 43.11 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 44.02 | 42.74 |
| KRH10606 | Soybean | nucleus | 38.46 | 42.65 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 29.49 | 42.33 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 57.27 | 41.88 |
| Solyc04g076280.2.1 | Tomato | vacuole | 33.76 | 40.51 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 50.43 | 40.14 |
| KXG40019 | Sorghum | nucleus | 39.74 | 40.09 |
| Os03t0186600-01 | Rice | nucleus | 41.45 | 39.11 |
| Zm00001d027957_P001 | Maize | nucleus | 41.03 | 37.94 |
| KRH21757 | Soybean | nucleus | 39.32 | 37.1 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 29.06 | 28.33 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 21.37 | 27.78 |
Protein Annotations
| EntrezGene:100776749 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | EMBL:ACUP02003444 | EMBL:BT093824 | UniProt:C6T8M2 |
| ncoils:Coil | EnsemblPlantsGene:GLYMA_06G095700 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | ProteinID:KRH52933.1 | ProteinID:KRH52934.1 | EnsemblPlants:KRH52935 | ProteinID:KRH52935 | ProteinID:KRH52935.1 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001B1621C | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:-:7561527..7567456
Molecular Weight (calculated)
26109.3 Da
IEP (calculated)
5.479
GRAVY (calculated)
-0.468
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRTRIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVGLIVFSS TGKLFDYSSS SMNDIVTKYS THSHGINKLD KPSLELQLEA SNSAKLSKEI
101: ADRTQELSWL KGDDLQGLGL NELQQLEKTL EIGLDRVTDI KENQIMSQIS ELQKKGILLE EENKHLTKKL AEKEKEAMLC KAKIPFMVDS DKGIMQEEGV
201: SLDSTNNISS CISDPPLEDG SSDISLTLGL PFSN
101: ADRTQELSWL KGDDLQGLGL NELQQLEKTL EIGLDRVTDI KENQIMSQIS ELQKKGILLE EENKHLTKKL AEKEKEAMLC KAKIPFMVDS DKGIMQEEGV
201: SLDSTNNISS CISDPPLEDG SSDISLTLGL PFSN
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.