CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00551
KRH00625
KRH03173
KRH07467
KRH21150
KRH39494
KRH40554
KRH40615
KRH42047
KRH42930
KRH45412
KRH48304
KRH52935
KRH56774
KRH59043
KRH62216
KRH65189
KRH65193
KRH70974
KRH74451

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11880.1	KRH07467	AT1G69120.1	15805477
AT4G11880.1	KRH45412	AT1G69120.1	15805477
AT4G11880.1	KRH70974	AT1G69120.1	15805477
AT4G11880.1	KRH48304	AT2G45650.1	15805477
AT4G11880.1	KRH65193	AT2G45650.1	15805477
AT4G11880.1	KRH00625	AT2G45660.1	15805477
AT4G11880.1	KRH40554	AT2G45660.1	15805477
AT4G11880.1	KRH65189	AT2G45660.1	15805477
AT4G11880.1	KRH00551	AT3G54220.1	19228333
AT4G11880.1	KRH40615	AT3G54220.1	19228333
AT4G11880.1	KRH42047	AT3G57230.1	15805477
AT4G11880.1	KRH21150	AT4G18960.1	15805477
AT4G11880.1	KRH42930	AT4G18960.1	15805477
AT4G11880.1	KRH59043	AT4G18960.1	15805477
AT4G11880.1	KRH52935	AT4G24540.1	15805477
AT4G11880.1	KRH62216	AT4G24540.1	15805477
AT4G11880.1	KRH03173	AT5G60910.1	15805477
AT4G11880.1	KRH56774	AT5G60910.1	15805477
AT4G22950.1	KRH00625	AT2G45660.1	15805477
AT4G22950.1	KRH40554	AT2G45660.1	15805477
AT4G22950.1	KRH65189	AT2G45660.1	15805477
AT4G22950.1	KRH39494	AT4G37940.1	15805477
AT4G22950.1	KRH74451	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03997	Soybean	nucleus	89.87	91.48
CDY10829	Canola	nucleus	24.67	81.16
CDY41268	Canola	nucleus	24.67	81.16
KRH48297	Soybean	nucleus	27.75	70.79
CDY68007	Canola	nucleus	42.29	64.0
Bra029424.1-P	Field mustard	nucleus	46.7	61.27
CDY13289	Canola	nucleus	57.71	60.37
Bra020826.1-P	Field mustard	nucleus	38.77	60.27
VIT_02s0025g04650.t01	Wine grape	nucleus	56.39	59.81
AT4G11880.1	Thale cress	nucleus	57.27	58.82
CDX86738	Canola	nucleus	56.39	58.18
AT4G22950.1	Thale cress	nucleus	55.51	57.53
KRH00625	Soybean	nucleus	52.86	57.42
Bra019343.1-P	Field mustard	nucleus	55.07	57.08
CDX98780	Canola	nucleus	54.63	56.62
KRH40554	Soybean	nucleus	51.98	55.92
CDY55821	Canola	nucleus	53.74	55.2
CDX76346	Canola	nucleus	53.74	55.2
KRG91427	Soybean	nucleus	44.93	47.66
KRH35396	Soybean	nucleus	44.49	47.2
KRH65189	Soybean	nucleus	48.9	46.84
KRH48299	Soybean	nucleus	23.79	39.42

Protein Annotations

EntrezGene:100805260	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02002823	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G050700
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1K0E6	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
ProteinID:KRH57266.1	EnsemblPlants:KRH57267	ProteinID:KRH57267	ProteinID:KRH57267.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00023C4328	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:4535791..4543326

Molecular Weight (calculated)

26812.4 Da

IEP (calculated)

9.720

GRAVY (calculated)

-0.877

Length

227 amino acids

Sequence
(BLAST)

001: MVRGKTQMKR IENETSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGRLYEFSSS RCSSINKTVE RYQRKIEDLG VSNKGIHENT QHLKEVDMSM
101: AKKIEHLEDS RRKLLGDELD KCSIDELQQL ENQLERSLDK IRATKNQLFR KRIEKLKEEE KCLLEVNKRL REQYRIERQR CLSDQDVEFA TKKEGEEVET
201: ELFIGRPERR MPLKLKPTTY SAHAYIA

Best Arabidopsis Sequence Match ( AT4G22950.3 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.