Factsheet for VIT_02s0025g04650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_08s0056g00050.t01
VIT_10s0003g02070.t01
VIT_15s0048g01270.t01
VIT_17s0000g04990.t01
VIT_18s0001g07460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11880.1	VIT_15s0048g01270.t01	AT2G45650.1	15805477
AT4G11880.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333
AT4G11880.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT4G11880.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT4G11880.1	VIT_17s0000g04990.t01	AT5G60910.1	15805477
AT4G22950.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g01240.t01	Wine grape	nucleus	25.23	88.52
CDY10829	Canola	nucleus	25.7	79.71
CDY41268	Canola	nucleus	25.7	79.71
VIT_16s0022g02400.t01	Wine grape	nucleus	24.3	65.82
CDY68007	Canola	nucleus	45.79	65.33
Bra020826.1-P	Field mustard	nucleus	41.12	60.27
Bra019343.1-P	Field mustard	nucleus	59.35	57.99
CDX98780	Canola	nucleus	58.41	57.08
Bra029424.1-P	Field mustard	nucleus	45.79	56.65
AT4G22950.1	Thale cress	nucleus	57.94	56.62
KRH57267	Soybean	nucleus	59.81	56.39
KRH03997	Soybean	nucleus	58.41	56.05
CDY13289	Canola	nucleus	56.54	55.76
CDY55821	Canola	nucleus	57.48	55.66
CDX76346	Canola	nucleus	57.48	55.66
AT4G11880.1	Thale cress	nucleus	57.01	55.2
CDX86738	Canola	nucleus	56.54	55.0
VIT_15s0048g01250.t01	Wine grape	nucleus	33.64	45.86
VIT_16s0022g02380.t01	Wine grape	nucleus	30.37	30.66

Protein Annotations

EntrezGene:100246102	wikigene:100246102	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB58413	ProteinID:CCB58413.1
ncoils:Coil	UniProt:F6HUJ0	EMBL:FN596251	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100246102	wikigene:LOC100246102	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00015CD103	ArrayExpress:VIT_02s0025g04650	EnsemblPlantsGene:VIT_02s0025g04650	EnsemblPlants:VIT_02s0025g04650.t01	RefSeq:XP_002275695	RefSeq:XP_002275695.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4197382..4208969

Molecular Weight (calculated)

24358.4 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.604

Length

214 amino acids

Sequence
(BLAST)

001: MVRGKTQMKR IENAASRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKVFEFSSS SINKTIERYQ SKAKGLGISK RGAPENEQHH LEGETVDLAK
101: KIELLEVSKR RLLGECLDSC SIEELQQIEN ELEQSLSNIR IQKNHLCKGH IERLKEQERI LGEENAKLRG KCGLQPLQPS TKHQSVPYVE ISEVETELFI
201: GPPERRTVRY LSET

Best Arabidopsis Sequence Match ( AT4G22950.3 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.