CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69345
CDX74755
CDX75686
CDX90394
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22950.1	CDX74755	AT2G45660.1	15805477
AT4G22950.1	CDY27368	AT2G45660.1	15805477
AT4G22950.1	CDY37054	AT2G45660.1	15805477
AT4G22950.1	CDY53886	AT2G45660.1	15805477
AT4G22950.1	CDY60689	AT2G45660.1	15805477
AT4G22950.1	CDY69077	AT2G45660.1	15805477
AT4G22950.1	CDX69345	AT4G37940.1	15805477
AT4G22950.1	CDX75686	AT4G37940.1	15805477
AT4G22950.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41268	Canola	nucleus	100.0	100.0
CDY00504	Canola	nucleus	63.77	72.13
CDY32614	Canola	nucleus	65.22	40.54
CDY68007	Canola	nucleus	85.51	39.33
CDX76346	Canola	nucleus	92.75	28.96
CDY55821	Canola	nucleus	92.75	28.96
CDY13289	Canola	nucleus	88.41	28.11
CDX86738	Canola	nucleus	88.41	27.73
AT4G22950.1	Thale cress	nucleus	85.51	26.94
CDX98780	Canola	nucleus	85.51	26.94
CDY16792	Canola	nucleus	73.91	26.42
CDY60689	Canola	nucleus	81.16	26.29
CDY37054	Canola	nucleus	81.16	26.29
CDY53886	Canola	nucleus	81.16	26.29
CDY27368	Canola	nucleus	81.16	26.29
CDY69077	Canola	nucleus	81.16	26.29
CDX74755	Canola	nucleus	81.16	26.29
VIT_02s0025g04650.t01	Wine grape	nucleus	79.71	25.7
KRH57267	Soybean	nucleus	81.16	24.67
KRH03997	Soybean	nucleus	79.71	24.66
CDY56935	Canola	nucleus	71.01	24.02
CDY30701	Canola	nucleus	72.46	23.92
CDY68754	Canola	nucleus	65.22	23.44
CDY02145	Canola	nucleus	69.57	22.75
CDY38881	Canola	nucleus	65.22	22.06
CDY38882	Canola	nucleus	69.57	21.92
CDY32613	Canola	nucleus	69.57	21.92
CDY00505	Canola	nucleus	68.12	21.56
CDY66015	Canola	nucleus	68.12	21.46
CDY52354	Canola	nucleus	66.67	21.0
CDX94444	Canola	nucleus	66.67	21.0
CDY55721	Canola	nucleus	66.67	20.91
CDY42874	Canola	nucleus	68.12	20.61
CDY51028	Canola	nucleus	63.77	19.05
CDY51029	Canola	nucleus	26.09	9.94
CDX94141	Canola	nucleus	10.14	5.79
CDY41269	Canola	nucleus	10.14	4.12
CDY10828	Canola	nucleus	8.7	3.53

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HWX3	UniProt:A0A078HWX3	EnsemblPlants:CDY10829	ProteinID:CDY10829
ProteinID:CDY10829.1	ProteinID:CDY41268.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00048692001	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EE8F7F

Description

BnaC01g14440DBnaA01g12710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWX3]

Coordinates

chrLK032007:-:130881..132239

Molecular Weight (calculated)

7825.6 Da

IEP (calculated)

10.565

GRAVY (calculated)

-0.230

Length

69 amino acids

Sequence
(BLAST)

1: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP SSKLYEFSSS GQERLITIN

Best Arabidopsis Sequence Match ( AT4G22950.2 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.