Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51860.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G51860.1 | CDY50584 | AT1G48150.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 25.54 | 96.72 |
| CDY68754 | Canola | nucleus | 73.16 | 88.02 |
| CDY38881 | Canola | nucleus | 69.7 | 78.92 |
| CDY32614 | Canola | nucleus | 37.23 | 77.48 |
| Solyc06g035570.1.1 | Tomato | nucleus | 17.75 | 75.93 |
| AT5G51860.1 | Thale cress | nucleus | 65.8 | 72.04 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 22.08 | 64.56 |
| CDY41268 | Canola | nucleus | 19.05 | 63.77 |
| CDY10829 | Canola | nucleus | 19.05 | 63.77 |
| CDY38882 | Canola | nucleus | 51.95 | 54.79 |
| CDY32613 | Canola | nucleus | 51.95 | 54.79 |
| CDY52354 | Canola | nucleus | 51.95 | 54.79 |
| CDX94444 | Canola | nucleus | 50.65 | 53.42 |
| CDY66015 | Canola | nucleus | 50.65 | 53.42 |
| CDY00505 | Canola | nucleus | 50.22 | 53.21 |
| CDY55721 | Canola | nucleus | 50.65 | 53.18 |
| CDY16792 | Canola | nucleus | 44.16 | 52.85 |
| CDY02145 | Canola | nucleus | 47.19 | 51.66 |
| CDY30701 | Canola | nucleus | 46.32 | 51.2 |
| CDY56935 | Canola | nucleus | 44.59 | 50.49 |
| CDY42874 | Canola | nucleus | 49.35 | 50.0 |
| PGSC0003DMT400062319 | Potato | nucleus | 25.54 | 49.58 |
| Os03t0834466-00 | Rice | nucleus | 13.85 | 49.23 |
| CDY51029 | Canola | nucleus | 37.23 | 47.51 |
| CDY68007 | Canola | nucleus | 30.74 | 47.33 |
| CDY27368 | Canola | nucleus | 41.99 | 45.54 |
| CDY37054 | Canola | nucleus | 41.56 | 45.07 |
| PGSC0003DMT400065060 | Potato | nucleus | 21.64 | 45.05 |
| CDY69077 | Canola | nucleus | 39.83 | 43.19 |
| CDX74755 | Canola | nucleus | 39.83 | 43.19 |
| CDY60689 | Canola | nucleus | 39.83 | 43.19 |
| KRG91427 | Soybean | nucleus | 39.83 | 42.99 |
| CDY53886 | Canola | nucleus | 39.39 | 42.72 |
| KRH35396 | Soybean | nucleus | 39.39 | 42.52 |
| Solyc03g006830.2.1 | Tomato | nucleus | 40.69 | 42.34 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 12.99 | 42.25 |
| GSMUA_Achr10P... | Banana | nucleus | 35.93 | 41.09 |
| GSMUA_Achr11P... | Banana | nucleus | 36.36 | 40.38 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 36.36 | 39.44 |
| CDY13289 | Canola | nucleus | 36.8 | 39.17 |
| CDX98780 | Canola | nucleus | 36.8 | 38.81 |
| CDX86738 | Canola | nucleus | 36.8 | 38.64 |
| CDY55821 | Canola | nucleus | 36.36 | 38.01 |
| CDX76346 | Canola | nucleus | 36.36 | 38.01 |
| CDX94141 | Canola | nucleus | 14.72 | 28.1 |
| CDY41269 | Canola | nucleus | 19.05 | 25.88 |
| CDY10828 | Canola | nucleus | 18.61 | 25.29 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IPP7 | UniProt:A0A078IPP7 | EnsemblPlants:CDY51028 | ProteinID:CDY51028 |
| ProteinID:CDY51028.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00098053001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE38FD | SEG:seg | : |
Description
BnaC09g52890DBnaC09g52890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPP7]
Coordinates
chrLK032959:-:39674..42160
Molecular Weight (calculated)
27092.3 Da
IEP (calculated)
10.836
GRAVY (calculated)
-0.679
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFTSS DIQKTIKRYA EYKREYFVAE SHPMEQYVQG LKKEMATMVE
101: KIEMLEVHNR KLMGQNLASC SVKELQEIAT QIKKSLHIVR LRKAKLYGDE IEKLKAKERE LKDERVRLCE RGSWLFLGCL RRAPRLSSGG RSLGASRVSF
201: EDIGISRLEK DHWGRHQAAK RKRMWKLTYR R
101: KIEMLEVHNR KLMGQNLASC SVKELQEIAT QIKKSLHIVR LRKAKLYGDE IEKLKAKERE LKDERVRLCE RGSWLFLGCL RRAPRLSSGG RSLGASRVSF
201: EDIGISRLEK DHWGRHQAAK RKRMWKLTYR R
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.