Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0048g01240.t01 | Wine grape | nucleus | 25.35 | 88.52 |
| GSMUA_Achr5P20280_001 | Banana | nucleus | 25.82 | 87.3 |
| Solyc06g035570.1.1 | Tomato | nucleus | 19.25 | 75.93 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 26.76 | 72.15 |
| CDY00504 | Canola | nucleus | 19.72 | 68.85 |
| GSMUA_Achr11P... | Banana | nucleus | 66.2 | 67.79 |
| GSMUA_Achr10P... | Banana | nucleus | 59.15 | 62.38 |
| GSMUA_Achr11P... | Banana | nucleus | 38.5 | 56.94 |
| GSMUA_Achr11P... | Banana | nucleus | 40.85 | 56.86 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 55.4 | 55.66 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 36.15 | 55.4 |
| GSMUA_Achr11P... | Banana | nucleus | 41.78 | 54.6 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 53.99 | 53.24 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 52.11 | 52.61 |
| GSMUA_Achr8P12280_001 | Banana | nucleus | 46.95 | 51.81 |
| AT5G62165.2 | Thale cress | nucleus | 50.7 | 51.43 |
| CDY16792 | Canola | nucleus | 46.01 | 50.78 |
| Bra029281.1-P | Field mustard | nucleus | 49.77 | 50.72 |
| CDY30701 | Canola | nucleus | 49.77 | 50.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.47 | 50.51 |
| PGSC0003DMT400062319 | Potato | nucleus | 26.76 | 47.9 |
| PGSC0003DMT400065060 | Potato | nucleus | 24.88 | 47.75 |
| CDY68754 | Canola | nucleus | 42.25 | 46.88 |
| KRH35396 | Soybean | nucleus | 46.95 | 46.73 |
| Bra028282.1-P | Field mustard | nucleus | 43.66 | 46.04 |
| KRG91427 | Soybean | nucleus | 45.54 | 45.33 |
| CDY38881 | Canola | nucleus | 43.19 | 45.1 |
| Solyc03g006830.2.1 | Tomato | nucleus | 46.48 | 44.59 |
| CDY38882 | Canola | nucleus | 45.54 | 44.29 |
| Bra029154.1-P | Field mustard | nucleus | 45.54 | 44.29 |
| CDY32614 | Canola | nucleus | 23.0 | 44.14 |
| CDY32613 | Canola | nucleus | 45.07 | 43.84 |
| Bra029155.1-P | Field mustard | nucleus | 42.72 | 43.54 |
| AT5G51860.1 | Thale cress | nucleus | 42.72 | 43.13 |
| CDY02145 | Canola | nucleus | 42.25 | 42.65 |
| Bra012957.1-P | Field mustard | nucleus | 42.25 | 42.65 |
| Bra013891.1-P | Field mustard | nucleus | 37.56 | 42.33 |
| Bra029314.1-P | Field mustard | nucleus | 37.09 | 42.25 |
| Bra028283.1-P | Field mustard | nucleus | 39.44 | 42.21 |
| GSMUA_Achr11P... | Banana | nucleus | 31.46 | 42.14 |
| AT5G51870.3 | Thale cress | nucleus | 45.07 | 41.92 |
| CDY00505 | Canola | nucleus | 42.72 | 41.74 |
| CDY56935 | Canola | nucleus | 39.44 | 41.18 |
| Bra010465.1-P | Field mustard | nucleus | 34.74 | 39.57 |
| CDY66015 | Canola | nucleus | 40.38 | 39.27 |
| CDY55721 | Canola | nucleus | 40.38 | 39.09 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 23.0 | 38.89 |
| CDY52354 | Canola | nucleus | 39.91 | 38.81 |
| CDY42874 | Canola | nucleus | 41.31 | 38.6 |
| CDX94444 | Canola | nucleus | 38.97 | 37.9 |
| VIT_15s0048g01250.t01 | Wine grape | nucleus | 27.7 | 37.58 |
| Bra035907.1-P | Field mustard | nucleus | 47.42 | 37.13 |
| CDY51028 | Canola | nucleus | 39.44 | 36.36 |
| GSMUA_Achr11P... | Banana | nucleus | 26.76 | 35.85 |
| CDY51029 | Canola | nucleus | 28.64 | 33.7 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr2G04340_001 |
| EnsemblPlants:GSMUA_Achr2P04340_001 | EnsemblPlants:GSMUA_Achr2T04340_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0S525 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00029508D1 | SEG:seg | : | : |
Description
MADS-box transcription factor 50 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04340_001]
Coordinates
chr2:+:9758590..9767842
Molecular Weight (calculated)
24505.6 Da
IEP (calculated)
9.129
GRAVY (calculated)
-0.684
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEMRR IENAASRQVT FSKRRNGLLK KAYELSVLCD AEVAVIVFSP RGKLYEFSSS SVERTIDRYK MHTKDANIMD KGTDSDMQQW ISEATDIAKK
101: IEVIEAQKRK LLGDGLESCS LKELCELEAQ MERSLHKIRG RKQYVLTEQI AQLKDKVRVL LEENVKLHRE RHIEPQLQLA STRDVGPKNH GNQEITEVET
201: ELVIGRPGIR EDK
101: IEVIEAQKRK LLGDGLESCS LKELCELEAQ MERSLHKIRG RKQYVLTEQI AQLKDKVRVL LEENVKLHRE RHIEPQLQLA STRDVGPKNH GNQEITEVET
201: ELVIGRPGIR EDK
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.