Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00505 | Canola | nucleus | 71.18 | 74.77 |
| CDY32613 | Canola | nucleus | 71.18 | 74.43 |
| Bra028283.1-P | Field mustard | nucleus | 64.63 | 74.37 |
| CDY38882 | Canola | nucleus | 70.74 | 73.97 |
| Bra029154.1-P | Field mustard | nucleus | 70.31 | 73.52 |
| Solyc06g035570.1.1 | Tomato | nucleus | 17.03 | 72.22 |
| CDY51029 | Canola | nucleus | 55.46 | 70.17 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 21.4 | 62.03 |
| AT5G51860.1 | Thale cress | nucleus | 56.77 | 61.61 |
| AT5G62165.2 | Thale cress | nucleus | 49.78 | 54.29 |
| GSMUA_Achr10P... | Banana | nucleus | 43.23 | 49.01 |
| GSMUA_Achr11P... | Banana | nucleus | 43.67 | 48.08 |
| Os03t0834466-00 | Rice | nucleus | 13.54 | 47.69 |
| PGSC0003DMT400062319 | Potato | nucleus | 24.45 | 47.06 |
| AT2G45660.1 | Thale cress | nucleus | 43.67 | 46.73 |
| KRG91427 | Soybean | nucleus | 43.23 | 46.26 |
| KRH35396 | Soybean | nucleus | 43.23 | 46.26 |
| PGSC0003DMT400065060 | Potato | nucleus | 22.27 | 45.95 |
| Solyc03g006830.2.1 | Tomato | nucleus | 44.1 | 45.5 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 41.92 | 45.07 |
| AT4G11880.1 | Thale cress | nucleus | 41.92 | 43.44 |
| AT4G22950.1 | Thale cress | nucleus | 41.05 | 42.92 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 12.66 | 40.85 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:835262 | ProteinID:AED96140.2 | Symbol:AGL71 | ProteinID:ANM69727.1 |
| ArrayExpress:AT5G51870 | EnsemblPlantsGene:AT5G51870 | RefSeq:AT5G51870 | TAIR:AT5G51870 | RefSeq:AT5G51870-TAIR-G | EnsemblPlants:AT5G51870.3 |
| TAIR:AT5G51870.3 | ncoils:Coil | UniProt:F4KEP6 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009909 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001190517.2 | RefSeq:NP_001331386.1 | PFAM:PF00319 | PFAM:PF01486 |
| PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009046 | PO:PO:0025022 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00084866E1 | SEG:seg |
Description
AGL71AGAMOUS-like 71 [Source:TAIR;Acc:AT5G51870]
Coordinates
chr5:-:21085462..21088004
Molecular Weight (calculated)
26512.3 Da
IEP (calculated)
9.998
GRAVY (calculated)
-0.570
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLGMNIAGT MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS QMEKIIDRYG KFSNAFYVAE RPQVERYLQE
101: LKMEIDRMVK KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP VVPATLQICD
201: KGNTEGGHRT KHSSEVETDL FIGLPVTRL
101: LKMEIDRMVK KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP VVPATLQICD
201: KGNTEGGHRT KHSSEVETDL FIGLPVTRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.