Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 39.5 | 77.05 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 42.86 | 64.56 |
| CDY32614 | Canola | nucleus | 47.9 | 51.35 |
| PGSC0003DMT400065060 | Potato | nucleus | 43.7 | 46.85 |
| Solyc03g006830.2.1 | Tomato | nucleus | 71.43 | 38.29 |
| CDY16792 | Canola | nucleus | 50.42 | 31.09 |
| CDY68754 | Canola | nucleus | 49.58 | 30.73 |
| CDY38881 | Canola | nucleus | 50.42 | 29.41 |
| Bra028282.1-P | Field mustard | nucleus | 49.58 | 29.21 |
| Bra029314.1-P | Field mustard | nucleus | 45.38 | 28.88 |
| Bra029155.1-P | Field mustard | nucleus | 50.42 | 28.71 |
| Bra013891.1-P | Field mustard | nucleus | 45.38 | 28.57 |
| Bra029281.1-P | Field mustard | nucleus | 49.58 | 28.23 |
| CDY30701 | Canola | nucleus | 49.58 | 28.23 |
| AT5G62165.2 | Thale cress | nucleus | 49.58 | 28.1 |
| AT5G51860.1 | Thale cress | nucleus | 49.58 | 27.96 |
| Bra028283.1-P | Field mustard | nucleus | 46.22 | 27.64 |
| GSMUA_Achr10P... | Banana | nucleus | 46.22 | 27.23 |
| CDY38882 | Canola | nucleus | 49.58 | 26.94 |
| CDY32613 | Canola | nucleus | 49.58 | 26.94 |
| Bra029154.1-P | Field mustard | nucleus | 49.58 | 26.94 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 47.9 | 26.76 |
| GSMUA_Achr11P... | Banana | nucleus | 46.22 | 26.44 |
| KRH35396 | Soybean | nucleus | 47.06 | 26.17 |
| CDY00505 | Canola | nucleus | 47.9 | 26.15 |
| CDX94444 | Canola | nucleus | 47.9 | 26.03 |
| CDY55721 | Canola | nucleus | 47.9 | 25.91 |
| PGSC0003DMT400026576 | Potato | nucleus | 46.22 | 25.7 |
| CDY66015 | Canola | nucleus | 47.06 | 25.57 |
| CDY52354 | Canola | nucleus | 47.06 | 25.57 |
| CDY51028 | Canola | nucleus | 49.58 | 25.54 |
| PGSC0003DMT400058560 | Potato | nucleus | 47.9 | 25.45 |
| KRG91427 | Soybean | nucleus | 45.38 | 25.23 |
| Bra010465.1-P | Field mustard | nucleus | 39.5 | 25.13 |
| CDY56935 | Canola | nucleus | 42.86 | 25.0 |
| Bra012957.1-P | Field mustard | nucleus | 43.7 | 24.64 |
| CDY02145 | Canola | nucleus | 43.7 | 24.64 |
| CDY42874 | Canola | nucleus | 47.06 | 24.56 |
| AT5G51870.3 | Thale cress | nucleus | 47.06 | 24.45 |
| PGSC0003DMT400000028 | Potato | nucleus | 45.38 | 24.11 |
| Bra035907.1-P | Field mustard | nucleus | 50.42 | 22.06 |
| CDY51029 | Canola | nucleus | 24.37 | 16.02 |
| PGSC0003DMT400062322 | Potato | nucleus | 4.2 | 3.94 |
| PGSC0003DMT400000030 | Potato | nucleus | 2.52 | 2.54 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1C8W0 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG401024252 | PGSC:PGSC0003DMG401024252 | EnsemblPlants:PGSC0003DMT400062319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000296DA84 | : | : | : | : |
Description
SOC1 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401024252]
Coordinates
chr3:-:41578383..41583244
Molecular Weight (calculated)
14026.0 Da
IEP (calculated)
10.356
GRAVY (calculated)
-0.484
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKVEMKR IENSTSRQVT FSKRRNGLTK KAYELSVLCD AEVAFIIFSH KGRLFEFASS NMQKIIERYH ARARETMTVD KSTELEHYME AIHHLWIPIN
101: NPVYGKSFLL NDRSQTFRL
101: NPVYGKSFLL NDRSQTFRL
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQEA IGTRNCFLFS
101: RRASRNR
101: RRASRNR
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.