Factsheet for Bra035907.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16792	Canola	nucleus	70.96	100.0
Solyc06g035570.1.1	Tomato	nucleus	16.54	83.33
Bra029281.1-P	Field mustard	nucleus	62.5	81.34
AT5G62165.2	Thale cress	nucleus	62.13	80.48
VIT_16s0022g02400.t01	Wine grape	nucleus	20.59	70.89
Os03t0834466-00	Rice	nucleus	13.6	56.92
Bra039324.1-P	Field mustard	nucleus	41.54	53.05
Bra028282.1-P	Field mustard	nucleus	38.6	51.98
Bra000393.1-P	Field mustard	nucleus	40.44	51.64
Bra004928.1-P	Field mustard	nucleus	40.44	51.64
PGSC0003DMT400065060	Potato	nucleus	20.96	51.35
Os01t0903800-00	Rice	cytosol, nucleus	13.24	50.7
KRH35396	Soybean	nucleus	39.71	50.47
PGSC0003DMT400062319	Potato	nucleus	22.06	50.42
KRG91427	Soybean	nucleus	39.34	50.0
Bra029424.1-P	Field mustard	nucleus	31.62	49.71
GSMUA_Achr10P...	Banana	nucleus	36.03	48.51
Bra029155.1-P	Field mustard	nucleus	37.13	48.33
Bra013891.1-P	Field mustard	nucleus	33.46	48.15
Bra029154.1-P	Field mustard	nucleus	38.6	47.95
GSMUA_Achr2P04340_001	Banana	nucleus	37.13	47.42
Bra020826.1-P	Field mustard	nucleus	25.37	47.26
GSMUA_Achr11P...	Banana	nucleus	36.03	47.12
Bra012957.1-P	Field mustard	nucleus	36.4	46.92
Solyc03g006830.2.1	Tomato	nucleus	38.24	46.85
Bra028283.1-P	Field mustard	nucleus	34.19	46.73
Bra019343.1-P	Field mustard	nucleus	36.76	45.66
Bra029314.1-P	Field mustard	nucleus	31.25	45.45
Bra010465.1-P	Field mustard	nucleus	27.94	40.64

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra035907	EnsemblPlants:Bra035907.1	EnsemblPlants:Bra035907.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4F4A7
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254208C	SEG:seg	:	:

Description

AT5G62165 (E=3e-075) AGL42 | AGL42 (AGAMOUS LIKE 42); transcription factor

Coordinates

chrA09:+:2971716..2977084

Molecular Weight (calculated)

31733.3 Da

IEP (calculated)

10.217

GRAVY (calculated)

-0.667

Length

272 amino acids

Sequence
(BLAST)

001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSSS DMQNTIERYH TYRNDHETSN QYSEMYIQQL KQEASHMIAK
101: IELLEFHKRK LLGQELSSCS LQELQEIDSQ LQRSLGEVRA RKAQMFKEQL EKLKAKEKQL LEENVQLHQK NVIDPWRGSI DQQKKFRVID LNLSVDALLL
201: LVLRTKPCSL RLLRRWNRIR ERASGGSATL TQSDLANTNT DLPDNVGELM GIQTIFNEKS QSTKRIMASW QR

Best Arabidopsis Sequence Match ( AT5G62165.3 )
(BLAST)

001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC

Arabidopsis Description

AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.