Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0903800-00 | Rice | cytosol, nucleus | 69.23 | 63.38 |
| VIT_15s0048g01240.t01 | Wine grape | nucleus | 55.38 | 59.02 |
| Solyc06g035570.1.1 | Tomato | nucleus | 47.69 | 57.41 |
| CDY00504 | Canola | nucleus | 47.69 | 50.82 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 56.92 | 46.84 |
| CDY32614 | Canola | nucleus | 50.77 | 29.73 |
| CDY16792 | Canola | nucleus | 56.92 | 19.17 |
| Os01t0922800-01 | Rice | nucleus | 46.15 | 18.29 |
| Bra029281.1-P | Field mustard | nucleus | 58.46 | 18.18 |
| CDY30701 | Canola | nucleus | 58.46 | 18.18 |
| AT5G62165.2 | Thale cress | nucleus | 58.46 | 18.1 |
| Bra029314.1-P | Field mustard | nucleus | 49.23 | 17.11 |
| Bra013891.1-P | Field mustard | nucleus | 49.23 | 16.93 |
| CDY68754 | Canola | nucleus | 49.23 | 16.67 |
| Bra028283.1-P | Field mustard | nucleus | 50.77 | 16.58 |
| Bra010465.1-P | Field mustard | nucleus | 47.69 | 16.58 |
| Os08t0531900-01 | Rice | nucleus | 46.15 | 16.39 |
| KRH35396 | Soybean | nucleus | 52.31 | 15.89 |
| Os10t0536100-01 | Rice | nucleus | 56.92 | 15.88 |
| Bra028282.1-P | Field mustard | nucleus | 49.23 | 15.84 |
| CDY38881 | Canola | nucleus | 49.23 | 15.69 |
| Os03t0122600-01 | Rice | nucleus | 55.38 | 15.65 |
| Solyc03g006830.2.1 | Tomato | nucleus | 52.31 | 15.32 |
| Bra029155.1-P | Field mustard | nucleus | 49.23 | 15.31 |
| CDY56935 | Canola | nucleus | 47.69 | 15.2 |
| AT5G51860.1 | Thale cress | nucleus | 49.23 | 15.17 |
| CDY00505 | Canola | nucleus | 50.77 | 15.14 |
| CDY66015 | Canola | nucleus | 50.77 | 15.07 |
| Bra029154.1-P | Field mustard | nucleus | 50.77 | 15.07 |
| CDY38882 | Canola | nucleus | 50.77 | 15.07 |
| CDY32613 | Canola | nucleus | 50.77 | 15.07 |
| KRG91427 | Soybean | nucleus | 49.23 | 14.95 |
| CDY52354 | Canola | nucleus | 49.23 | 14.61 |
| CDX94444 | Canola | nucleus | 49.23 | 14.61 |
| Os06t0108500-01 | Rice | nucleus | 47.69 | 14.55 |
| CDY55721 | Canola | nucleus | 49.23 | 14.55 |
| Bra012957.1-P | Field mustard | nucleus | 46.15 | 14.22 |
| CDY02145 | Canola | nucleus | 46.15 | 14.22 |
| CDY42874 | Canola | nucleus | 49.23 | 14.04 |
| CDY51028 | Canola | nucleus | 49.23 | 13.85 |
| Bra035907.1-P | Field mustard | nucleus | 56.92 | 13.6 |
| AT5G51870.3 | Thale cress | nucleus | 47.69 | 13.54 |
| CDY51029 | Canola | nucleus | 18.46 | 6.63 |
| VIT_15s0048g01250.t01 | Wine grape | nucleus | 1.54 | 0.64 |
| GSMUA_Achr11P... | Banana | nucleus | 1.54 | 0.63 |
| PGSC0003DMT400062322 | Potato | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A0P0W5T9 | ProteinID:BAS87240.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | EnsemblPlantsGene:Os03g0834466 |
| EnsemblPlants:Os03t0834466-00 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0003939128 | : |
Description
Similar to MADS-box transcription factor 21. (Os03t0834466-00)
Coordinates
chr3:+:35062479..35062689
Molecular Weight (calculated)
7434.2 Da
IEP (calculated)
10.167
GRAVY (calculated)
0.020
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MFVKGDRLID IGRIKSMTSR QVTSGKHRND LLKKAYELAL LCDAEIGLII FSSRGRLYEF SNIIM
001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.