Factsheet for Bra010465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035570.1.1	Tomato	nucleus	20.86	72.22
CDY52354	Canola	nucleus	79.68	68.04
CDY66015	Canola	nucleus	75.4	64.38
VIT_16s0022g02400.t01	Wine grape	nucleus	26.74	63.29
Bra013891.1-P	Field mustard	nucleus	60.96	60.32
Bra029314.1-P	Field mustard	nucleus	56.15	56.15
Bra028282.1-P	Field mustard	nucleus	52.94	49.01
Bra012957.1-P	Field mustard	nucleus	54.55	48.34
Os03t0834466-00	Rice	nucleus	16.58	47.69
PGSC0003DMT400065060	Potato	nucleus	27.81	46.85
Bra020826.1-P	Field mustard	nucleus	35.29	45.21
Bra029155.1-P	Field mustard	nucleus	50.27	44.98
Bra028283.1-P	Field mustard	nucleus	47.06	44.22
Bra029154.1-P	Field mustard	nucleus	49.2	42.01
Os01t0903800-00	Rice	cytosol, nucleus	15.51	40.85
Bra029424.1-P	Field mustard	nucleus	37.43	40.46
PGSC0003DMT400062319	Potato	nucleus	25.13	39.5
Bra029281.1-P	Field mustard	nucleus	43.85	39.23
KRH35396	Soybean	nucleus	41.71	36.45
KRG91427	Soybean	nucleus	41.18	35.98
Bra039324.1-P	Field mustard	nucleus	40.64	35.68
Bra000393.1-P	Field mustard	nucleus	40.64	35.68
GSMUA_Achr2P04340_001	Banana	nucleus	39.57	34.74
Bra004928.1-P	Field mustard	nucleus	39.57	34.74
GSMUA_Achr11P...	Banana	nucleus	38.5	34.62
Solyc03g006830.2.1	Tomato	nucleus	40.64	34.23
GSMUA_Achr10P...	Banana	nucleus	35.83	33.17
Bra019343.1-P	Field mustard	nucleus	37.97	32.42
Bra035907.1-P	Field mustard	nucleus	40.64	27.94

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra010465	EnsemblPlants:Bra010465.1	EnsemblPlants:Bra010465.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D1W5	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF337	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002545A3F	SEG:seg	:	:	:	:

Description

AT5G51860 (E=1e-023) | MADS-box protein (AGL72)

Coordinates

chrA08:+:14664048..14666749

Molecular Weight (calculated)

21313.8 Da

IEP (calculated)

8.933

GRAVY (calculated)

-0.388

Length

187 amino acids

Sequence
(BLAST)

001: MVRGKIEIKR IEDVTSRHVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS EKLMGQDLDS CSVEELKEIT TKIEKSLTIV RSRKIVAERE
101: VLNDKSRLRQ MVHTYINQGH ASLKIEFVSS MKYLENNMLS FQFEEQPLWI QSRSLESEKS APSCSCGNMN LSDVETDLSI GLPQSRV

Best Arabidopsis Sequence Match ( AT5G51860.2 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP

Arabidopsis Description

AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.