Factsheet for Bra013891.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55721	Canola	nucleus	98.41	84.55
CDX94444	Canola	nucleus	96.83	83.56
Solyc06g035570.1.1	Tomato	nucleus	21.69	75.93
Bra029314.1-P	Field mustard	nucleus	73.02	73.8
VIT_16s0022g02400.t01	Wine grape	nucleus	26.45	63.29
Bra010465.1-P	Field mustard	nucleus	60.32	60.96
Bra012957.1-P	Field mustard	nucleus	66.67	59.72
Bra028282.1-P	Field mustard	nucleus	60.32	56.44
Bra029155.1-P	Field mustard	nucleus	59.26	53.59
Bra028283.1-P	Field mustard	nucleus	54.5	51.76
Os03t0834466-00	Rice	nucleus	16.93	49.23
PGSC0003DMT400065060	Potato	nucleus	27.51	46.85
Bra029281.1-P	Field mustard	nucleus	50.79	45.93
PGSC0003DMT400062319	Potato	nucleus	28.57	45.38
Bra029154.1-P	Field mustard	nucleus	52.38	45.21
Bra020826.1-P	Field mustard	nucleus	34.92	45.21
KRH35396	Soybean	nucleus	47.09	41.59
Os01t0903800-00	Rice	cytosol, nucleus	15.34	40.85
KRG91427	Soybean	nucleus	46.03	40.65
Bra039324.1-P	Field mustard	nucleus	45.5	40.38
GSMUA_Achr11P...	Banana	nucleus	43.39	39.42
Bra000393.1-P	Field mustard	nucleus	43.92	38.97
Bra004928.1-P	Field mustard	nucleus	43.92	38.97
Solyc03g006830.2.1	Tomato	nucleus	45.5	38.74
GSMUA_Achr10P...	Banana	nucleus	40.21	37.62
Bra029424.1-P	Field mustard	nucleus	34.39	37.57
GSMUA_Achr2P04340_001	Banana	nucleus	42.33	37.56
Bra019343.1-P	Field mustard	nucleus	41.27	35.62
Bra035907.1-P	Field mustard	nucleus	48.15	33.46

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra013891	EnsemblPlants:Bra013891.1	EnsemblPlants:Bra013891.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DBN1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF344	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000254684F	:	:	:	:

Description

AT5G51860 (E=2e-050) | MADS-box protein (AGL72)

Coordinates

chrA01:-:8284322..8287253

Molecular Weight (calculated)

21940.6 Da

IEP (calculated)

9.277

GRAVY (calculated)

-0.608

Length

189 amino acids

Sequence
(BLAST)

001: MVKGKIEIKR IENLTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS DMQKMMERCE IHRNEYFGAE NLRKQQYVQE LKNEMVIMAD
101: KIELRRLHSR RLMGQDLDSC SVEELNEIIS KIEKSLTNVR SRKFEAQPLW MQSRSLKSEK SAPSCDCGNM NISDVETELS IGLRPESQM

Best Arabidopsis Sequence Match ( AT5G51860.1 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P

Arabidopsis Description

AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.