Factsheet for Bra028282.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra020600.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51860.1	Bra020600.1-P	AT1G48150.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00504	Canola	nucleus	29.7	98.36
CDY68754	Canola	nucleus	91.58	96.35
Bra029155.1-P	Field mustard	nucleus	89.11	86.12
AT5G51860.1	Thale cress	nucleus	83.66	80.09
Solyc06g035570.1.1	Tomato	nucleus	20.3	75.93
VIT_16s0022g02400.t01	Wine grape	nucleus	25.74	65.82
Bra013891.1-P	Field mustard	nucleus	56.44	60.32
Bra029154.1-P	Field mustard	nucleus	64.85	59.82
Bra029314.1-P	Field mustard	nucleus	53.47	57.75
Bra028283.1-P	Field mustard	nucleus	56.44	57.29
Bra012957.1-P	Field mustard	nucleus	57.92	55.45
Bra029281.1-P	Field mustard	nucleus	56.44	54.55
Bra010465.1-P	Field mustard	nucleus	49.01	52.94
PGSC0003DMT400062319	Potato	nucleus	29.21	49.58
Os03t0834466-00	Rice	nucleus	15.84	49.23
Bra039324.1-P	Field mustard	nucleus	50.99	48.36
Bra004928.1-P	Field mustard	nucleus	49.51	46.95
Bra000393.1-P	Field mustard	nucleus	49.51	46.95
PGSC0003DMT400065060	Potato	nucleus	25.74	46.85
KRG91427	Soybean	nucleus	49.01	46.26
Solyc03g006830.2.1	Tomato	nucleus	50.0	45.5
KRH35396	Soybean	nucleus	48.02	45.33
Bra020826.1-P	Field mustard	nucleus	32.67	45.21
Bra029424.1-P	Field mustard	nucleus	38.12	44.51
GSMUA_Achr11P...	Banana	nucleus	45.54	44.23
GSMUA_Achr2P04340_001	Banana	nucleus	46.04	43.66
GSMUA_Achr10P...	Banana	nucleus	43.56	43.56
Bra019343.1-P	Field mustard	nucleus	46.53	42.92
Os01t0903800-00	Rice	cytosol, nucleus	14.85	42.25
Bra035907.1-P	Field mustard	nucleus	51.98	38.6

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra028282	EnsemblPlants:Bra028282.1	EnsemblPlants:Bra028282.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EHL7
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002543BA7	:	:	:	:

Description

AT5G51860 (E=2e-093) | MADS-box protein (AGL72)

Coordinates

chrA01:+:18963793..18966158

Molecular Weight (calculated)

23371.6 Da

IEP (calculated)

10.232

GRAVY (calculated)

-0.662

Length

202 amino acids

Sequence
(BLAST)

001: MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS DIQKTIKRYA EYKTEYFVAE SHPMEQYVQG LKKEMVTMVE
101: KIEMLEVHNR KLMGQNLASC SVKELQEIAT QIEKSLHIVR SRKAKLYGDE IEKLKAKERE LKDERVRLCG RVGERPMGTP SSSKEKEDVE TDLVIGFPKS
201: RR

Best Arabidopsis Sequence Match ( AT5G51860.2 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP

Arabidopsis Description

AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.