Factsheet for Bra029424.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra007056.1-P
Bra011509.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra017638.1-P
Bra019221.1-P
Bra029347.1-P
Bra030228.1-P
Bra035952.1-P
Bra038326.1-P
Bra038511.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11880.1	Bra004007.1-P	AT1G69120.1	15805477
AT4G11880.1	Bra004361.1-P	AT1G69120.1	15805477
AT4G11880.1	Bra038326.1-P	AT1G69120.1	15805477
AT4G11880.1	Bra030228.1-P	AT2G22540.1	15805477
AT4G11880.1	Bra038511.1-P	AT2G22540.1	15805477
AT4G11880.1	Bra000392.1-P	AT2G45650.1	15805477
AT4G11880.1	Bra004927.1-P	AT2G45650.1	15805477
AT4G11880.1	Bra000393.1-P	AT2G45660.1	15805477
AT4G11880.1	Bra004928.1-P	AT2G45660.1	15805477
AT4G11880.1	Bra039324.1-P	AT2G45660.1	15805477
AT4G11880.1	Bra007056.1-P	AT3G54220.1	19228333
AT4G11880.1	Bra011509.1-P	AT3G57230.1	15805477
AT4G11880.1	Bra017638.1-P	AT3G57230.1	15805477
AT4G11880.1	Bra012564.1-P	AT4G18960.1	15805477
AT4G11880.1	Bra013364.1-P	AT4G18960.1	15805477
AT4G11880.1	Bra019221.1-P	AT4G24540.1	15805477
AT4G11880.1	Bra012997.1-P	AT5G60910.1	15805477
AT4G11880.1	Bra029347.1-P	AT5G60910.1	15805477
AT4G11880.1	Bra035952.1-P	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86738	Canola	nucleus	100.0	78.64
CDY13289	Canola	nucleus	95.95	76.5
Bra020826.1-P	Field mustard	nucleus	57.8	68.49
AT4G11880.1	Thale cress	nucleus	75.14	58.82
Bra019343.1-P	Field mustard	nucleus	68.79	54.34
Bra039324.1-P	Field mustard	nucleus	58.96	47.89
Bra004928.1-P	Field mustard	nucleus	58.38	47.42
KRH57267	Soybean	nucleus	61.27	46.7
Bra000393.1-P	Field mustard	nucleus	57.23	46.48
KRH03997	Soybean	nucleus	59.54	46.19
VIT_02s0025g04650.t01	Wine grape	nucleus	56.65	45.79
Bra029281.1-P	Field mustard	nucleus	53.18	44.02
Bra029154.1-P	Field mustard	nucleus	48.55	38.36
Bra028282.1-P	Field mustard	nucleus	44.51	38.12
Bra029314.1-P	Field mustard	nucleus	40.46	37.43
Bra010465.1-P	Field mustard	nucleus	40.46	37.43
Bra012957.1-P	Field mustard	nucleus	45.09	36.97
Bra028283.1-P	Field mustard	nucleus	41.62	36.18
Bra029155.1-P	Field mustard	nucleus	42.77	35.41
Bra013891.1-P	Field mustard	nucleus	37.57	34.39
Bra035907.1-P	Field mustard	nucleus	49.71	31.62

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029424	EnsemblPlants:Bra029424.1	EnsemblPlants:Bra029424.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987
GO:GO:0010076	GO:GO:0010082	GO:GO:0010228	GO:GO:0040007	GO:GO:0044212	GO:GO:0045944
GO:GO:0046983	GO:GO:2000012	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EKV7
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025427F6	SEG:seg	:	:

Description

AT4G11880 (E=1e-027) AGL14 | AGL14 (agamous-like 14); DNA binding / transcription factor

Coordinates

chrA09:-:18191146..18195112

Molecular Weight (calculated)

19782.8 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.707

Length

173 amino acids

Sequence
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RGKLYEFSSS SRKFLGEGLD ASSIEELQQL ENQLERSLTK IRAKKYQLLR
101: EELDKLKEKE RNLTAENKML TEKYEMGRGG IIPRTSSTTT SEDLDTEESE MEVVTDLLIG PPPIRHSKKF PPN

Best Arabidopsis Sequence Match ( AT4G11880.1 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKERNL IAENKMLMEK CEMQGRGIIG RISSSSSTSE LDIDDNEMEV
201: VTDLFIGPPE TRHFKKFPPS N

Arabidopsis Description

AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.