Factsheet for Bra038326.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra009436.1-P
Bra009911.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra017376.1-P
Bra017638.1-P
Bra019221.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra021470.1-P
Bra024372.1-P
Bra025126.1-P
Bra026543.1-P
Bra029424.1-P
Bra030228.1-P
Bra031905.1-P
Bra032192.1-P
Bra036931.1-P
Bra038326.1-P
Bra038511.1-P
Bra039170.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69120.1	Bra009911.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020524.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020525.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020550.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra020552.1-P	AT1G31630.1	15805477
AT1G69120.1	Bra009911.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020524.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020525.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020550.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra020552.1-P	AT1G31640.1	15805477
AT1G69120.1	Bra032192.1-P	AT1G43850.1	16854969
AT1G69120.1	Bra036931.1-P	AT1G43850.1	16854969
AT1G69120.1	Bra009436.1-P	AT1G46408.1	15805477
AT1G69120.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G69120.1	Bra004007.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra004361.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra038326.1-P	AT1G69120.1	15604664
AT1G69120.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G69120.1	Bra030228.1-P	AT2G22540.1	11439126
AT1G69120.1	Bra038511.1-P	AT2G22540.1	11439126
AT1G69120.1	Bra030228.1-P	AT2G22540.1	15805477
AT1G69120.1	Bra038511.1-P	AT2G22540.1	15805477
AT1G69120.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G69120.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G69120.1	Bra000393.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra004928.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra039324.1-P	AT2G45660.1	11439126
AT1G69120.1	Bra000393.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra004928.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra039324.1-P	AT2G45660.1	15805477
AT1G69120.1	Bra021470.1-P	AT3G02310.1	15604664
AT1G69120.1	Bra039170.1-P	AT3G02310.1	15604664
AT1G69120.1	Bra011509.1-P	AT3G57230.1	15805477
AT1G69120.1	Bra017638.1-P	AT3G57230.1	15805477
AT1G69120.1	Bra029424.1-P	AT4G11880.1	15805477
AT1G69120.1	Bra019221.1-P	AT4G24540.1	11439126
AT1G69120.1	Bra019221.1-P	AT4G24540.1	15805477
AT1G69120.1	Bra010623.1-P	AT4G37940.1	15805477
AT1G69120.1	Bra011797.1-P	AT4G37940.1	15805477
AT1G69120.1	Bra020600.1-P	AT5G27130.1	15805477
AT1G69120.1	Bra024372.1-P	AT5G65260.1	11439126
AT1G69120.1	Bra031905.1-P	AT5G65260.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65811	Canola	nucleus	100.0	100.0
AT1G69120.1	Thale cress	nucleus	94.14	94.14
Bra004361.1-P	Field mustard	nucleus	65.62	88.89
Bra004007.1-P	Field mustard	nucleus	93.36	88.19
Bra011021.1-P	Field mustard	nucleus	76.17	76.77
KRH07467	Soybean	nucleus	67.97	73.73
KRH45412	Soybean	nucleus	66.41	72.03
KRH70974	Soybean	nucleus	63.28	66.67
PGSC0003DMT400072888	Potato	nucleus	61.72	64.75
Solyc05g056620.1.1	Tomato	nucleus	61.72	64.75
Bra025411.1-P	Field mustard	nucleus	41.02	59.66
GSMUA_Achr6P00050_001	Banana	nucleus	53.52	56.61
GSMUA_Achr2P13650_001	Banana	nucleus	54.3	56.5
EER90862	Sorghum	nucleus	53.91	56.33
GSMUA_Achr4P23540_001	Banana	nucleus	52.34	54.03
TraesCS5A01G391700.1	Wheat	nucleus	51.17	53.69
Os03t0752800-02	Rice	nucleus	51.17	53.25
EER97510	Sorghum	nucleus	52.34	52.96
Bra029347.1-P	Field mustard	nucleus	49.61	52.92
Bra012997.1-P	Field mustard	nucleus	49.61	52.7
Zm00001d022088_P004	Maize	nucleus	52.73	52.33
Bra035952.1-P	Field mustard	nucleus	49.22	52.28
GSMUA_Achr8P04330_001	Banana	nucleus	49.61	51.84
TraesCS5B01G396600.2	Wheat	nucleus	50.39	51.39
GSMUA_Achr7P00460_001	Banana	nucleus	50.0	51.2
EER95753	Sorghum	nucleus	53.52	50.74
Os07t0108900-02	Rice	nucleus	52.73	50.56
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	50.0	50.39
Zm00001d018667_P003	Maize	nucleus	53.12	50.18
TraesCS2D01G262700.1	Wheat	nucleus	52.73	49.82
TraesCS2A01G261200.2	Wheat	nucleus	52.73	49.27
TraesCS2B01G281000.1	Wheat	nucleus	52.73	49.27
GSMUA_Achr10P...	Banana	nucleus	54.69	49.12
Zm00001d013259_P002	Maize	nucleus	53.12	48.75
GSMUA_Achr3P30440_001	Banana	nucleus	43.75	48.7
Os07t0605200-01	Rice	nucleus	47.27	48.59
TraesCS2B01G200800.1	Wheat	nucleus	49.61	47.57
TraesCS2D01G181400.3	Wheat	nucleus	49.61	47.57
GSMUA_Achr3P02280_001	Banana	nucleus	48.83	47.53
TraesCS2A01G174300.3	Wheat	nucleus	49.22	47.19
Bra036201.1-P	Field mustard	nucleus	45.31	46.77
Zm00001d034045_P003	Maize	nucleus	52.34	46.05
GSMUA_Achr3P25280_001	Banana	nucleus	46.88	45.11
Zm00001d007949_P001	Maize	nucleus	53.52	44.92
HORVU2Hr1G063800.7	Barley	nucleus, plastid	52.34	43.79
HORVU5Hr1G095630.3	Barley	nucleus, plastid	50.0	41.69
Bra010955.1-P	Field mustard	nucleus	38.67	40.57
Bra021470.1-P	Field mustard	nucleus	39.06	39.68
Bra006322.1-P	Field mustard	nucleus	38.67	39.6
Bra030032.1-P	Field mustard	nucleus	38.67	39.29
Bra008674.1-P	Field mustard	nucleus	38.67	39.29
Bra039170.1-P	Field mustard	nucleus	38.28	39.2
Bra032814.1-P	Field mustard	nucleus	38.67	39.13
Bra004927.1-P	Field mustard	nucleus	35.55	37.6
Bra025126.1-P	Field mustard	nucleus	37.11	36.97
Bra000392.1-P	Field mustard	nucleus	36.72	36.58
Os12t0501700-00	Rice	nucleus	33.2	36.48
Bra014454.1-P	Field mustard	nucleus	32.42	36.09
KXG23502	Sorghum	nucleus	31.25	35.87
Bra026543.1-P	Field mustard	nucleus	37.5	35.69
Bra037895.1-P	Field mustard	nucleus	30.08	33.48
Bra030222.1-P	Field mustard	nucleus	29.3	33.04
Bra011797.1-P	Field mustard	nucleus	28.91	32.46
Bra010623.1-P	Field mustard	nucleus	26.95	32.24
Bra013364.1-P	Field mustard	nucleus	31.64	32.14
Bra000696.1-P	Field mustard	nucleus	28.91	32.03
Bra004716.1-P	Field mustard	nucleus	30.47	31.97
Bra012564.1-P	Field mustard	nucleus	31.25	31.87
Zm00001d023736_P001	Maize	nucleus	31.64	31.52
Bra039921.1-P	Field mustard	nucleus	27.73	31.28
Bra007419.1-P	Field mustard	nucleus	28.91	30.2
Bra017638.1-P	Field mustard	nucleus	28.12	30.0
Bra014552.1-P	Field mustard	nucleus	28.91	29.84
Bra017376.1-P	Field mustard	nucleus	28.12	29.63
Bra003356.1-P	Field mustard	nucleus	27.34	25.64
Bra040719.1-P	Field mustard	nucleus	16.41	24.71
Bra011509.1-P	Field mustard	nucleus	27.34	24.14

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AC189458	EnsemblPlantsGene:Bra038326	EnsemblPlants:Bra038326.1	EnsemblPlants:Bra038326.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4FB60
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002546691	SEG:seg	:	:

Description

AT1G69120 (E=1e-123) AP1, AGL7 | AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor

Coordinates

chrA02:-:11232012..11235589

Molecular Weight (calculated)

30123.0 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.909

Length

256 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIDLLERNQR HYLGEDLQAM SSKELQNLEQ QLDTALKHIR SRKNQLMYDS INELQRKEKA IHEQNSMLSK EIKEREKILR AQQEQWDQQN HGHNVPPPPP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEED SMAMRRNDLD LSLEPVYNCN LGCFAS

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.