CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93698
KRH00625
KRH01380
KRH03997
KRH07467
KRH15928
KRH18102
KRH18339
KRH39494
KRH40554
KRH42047
KRH43152
KRH45097
KRH45412
KRH48304
KRH52935
KRH53367
KRH57267
KRH59303
KRH62216
KRH64564
KRH65189
KRH65193
KRH70973
KRH70974
KRH74451
KRH75123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69120.1	KRH15928	AT1G43850.1	16854969
AT1G69120.1	KRH18102	AT1G43850.1	16854969
AT1G69120.1	KRH53367	AT1G43850.1	16854969
AT1G69120.1	KRH64564	AT1G43850.1	16854969
AT1G69120.1	KRH07467	AT1G69120.1	15604664
AT1G69120.1	KRH45412	AT1G69120.1	15604664
AT1G69120.1	KRH70974	AT1G69120.1	15604664
AT1G69120.1	KRH70973	AT2G03710.1	15805477
AT1G69120.1	KRH75123	AT2G03710.1	15805477
AT1G69120.1	KRH48304	AT2G45650.1	15805477
AT1G69120.1	KRH65193	AT2G45650.1	15805477
AT1G69120.1	KRH00625	AT2G45660.1	11439126
AT1G69120.1	KRH40554	AT2G45660.1	11439126
AT1G69120.1	KRH65189	AT2G45660.1	11439126
AT1G69120.1	KRH00625	AT2G45660.1	15805477
AT1G69120.1	KRH40554	AT2G45660.1	15805477
AT1G69120.1	KRH65189	AT2G45660.1	15805477
AT1G69120.1	KRG93698	AT3G02310.1	15604664
AT1G69120.1	KRH01380	AT3G02310.1	15604664
AT1G69120.1	KRH18339	AT3G02310.1	15604664
AT1G69120.1	KRH45097	AT3G02310.1	15604664
AT1G69120.1	KRH42047	AT3G57230.1	15805477
AT1G69120.1	KRH03997	AT4G11880.1	15805477
AT1G69120.1	KRH57267	AT4G11880.1	15805477
AT1G69120.1	KRH52935	AT4G24540.1	11439126
AT1G69120.1	KRH62216	AT4G24540.1	11439126
AT1G69120.1	KRH52935	AT4G24540.1	15805477
AT1G69120.1	KRH62216	AT4G24540.1	15805477
AT1G69120.1	KRH39494	AT4G37940.1	15805477
AT1G69120.1	KRH74451	AT4G37940.1	15805477
AT1G69120.1	KRH43152	AT5G65260.1	11439126
AT1G69120.1	KRH59303	AT5G65260.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07467	Soybean	nucleus	97.03	97.03
KRH75125	Soybean	nucleus	25.0	96.72
KRH70974	Soybean	nucleus	83.47	81.07
Bra004361.1-P	Field mustard	nucleus	59.75	74.6
KRH64836	Soybean	nucleus	17.8	70.0
Solyc05g056620.1.1	Tomato	nucleus	69.92	67.62
PGSC0003DMT400072888	Potato	nucleus	69.92	67.62
AT1G69120.1	Thale cress	nucleus	73.31	67.58
CDY65811	Canola	nucleus	72.03	66.41
Bra038326.1-P	Field mustard	nucleus	72.03	66.41
CDY33554	Canola	nucleus	71.61	66.02
CDX95960	Canola	nucleus	71.19	65.62
Bra004007.1-P	Field mustard	nucleus	70.76	61.62
KRG97386	Soybean	nucleus	37.29	61.11
CDY04265	Canola	nucleus	71.61	61.01
KRH63171	Soybean	nucleus	62.29	60.25
KRH54740	Soybean	nucleus	61.44	59.43
CDY07357	Canola	nucleus	72.03	58.82
KRH11093	Soybean	nucleus	18.22	57.33
EER90862	Sorghum	nucleus	58.47	56.33
KRH03173	Soybean	nucleus	56.78	56.07
TraesCS5A01G391700.1	Wheat	nucleus	57.2	55.33
KRH56774	Soybean	nucleus	56.78	54.92
GSMUA_Achr2P13650_001	Banana	nucleus	57.2	54.88
GSMUA_Achr4P23540_001	Banana	nucleus	57.63	54.84
Os03t0752800-02	Rice	nucleus	56.78	54.47
GSMUA_Achr6P00050_001	Banana	nucleus	55.51	54.13
GSMUA_Achr7P00460_001	Banana	nucleus	56.78	53.6
KRH40560	Soybean	nucleus	34.75	52.9
TraesCS5B01G396600.2	Wheat	nucleus	55.93	52.59
TraesCS2D01G262700.1	Wheat	nucleus	59.75	52.03
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	55.93	51.97
EER95753	Sorghum	nucleus	58.9	51.48
TraesCS2A01G261200.2	Wheat	nucleus	59.75	51.46
TraesCS2B01G281000.1	Wheat	nucleus	59.75	51.46
Zm00001d018667_P003	Maize	nucleus	58.9	51.29
GSMUA_Achr8P04330_001	Banana	nucleus	52.97	51.02
Os07t0108900-02	Rice	nucleus	57.63	50.94
GSMUA_Achr10P...	Banana	nucleus	61.02	50.53
KRH45099	Soybean	nucleus	52.97	50.4
EER97510	Sorghum	nucleus	53.81	50.2
Zm00001d013259_P002	Maize	nucleus	58.47	49.46
KRH18331	Soybean	nucleus	50.42	48.77
GSMUA_Achr3P30440_001	Banana	nucleus	47.46	48.7
Zm00001d022088_P004	Maize	nucleus	52.97	48.45
KRG93701	Soybean	nucleus	50.0	48.36
GSMUA_Achr3P02280_001	Banana	nucleus	52.97	47.53
Os07t0605200-01	Rice	nucleus	49.58	46.99
KRH14461	Soybean	nucleus	20.34	46.15
Zm00001d034045_P003	Maize	nucleus	56.78	46.05
Zm00001d007949_P001	Maize	nucleus	59.32	45.9
HORVU2Hr1G063800.7	Barley	nucleus, plastid	58.9	45.42
TraesCS2D01G181400.3	Wheat	nucleus	51.27	45.32
TraesCS2B01G200800.1	Wheat	nucleus	51.27	45.32
TraesCS2A01G174300.3	Wheat	nucleus	50.85	44.94
KRH01382	Soybean	nucleus	47.46	44.27
GSMUA_Achr3P25280_001	Banana	nucleus	49.58	43.98
HORVU5Hr1G095630.3	Barley	nucleus, plastid	55.93	43.0
KRH03170	Soybean	nucleus	43.64	42.39
KRH56775	Soybean	nucleus	43.22	41.98
KRH31527	Soybean	nucleus	43.22	41.98
KRH58800	Soybean	nucleus	43.22	41.8
KRH42695	Soybean	nucleus	43.22	41.8
KRH48304	Soybean	nucleus	42.8	41.22
KRH45097	Soybean	nucleus	42.8	40.24
KRH65193	Soybean	nucleus	41.53	40.0
KRG93698	Soybean	nucleus	41.95	39.76
KRH18339	Soybean	nucleus	41.95	39.76
KRH70973	Soybean	nucleus	41.1	39.75
KRH01380	Soybean	nucleus	42.8	39.61
KRH00622	Soybean	nucleus	39.83	39.33
KRH75123	Soybean	nucleus	40.68	39.02
Os12t0501700-00	Rice	nucleus	36.86	37.34
KRH09173	Soybean	nucleus	37.29	37.29
KXG23502	Sorghum	nucleus	34.32	36.32
KRH38649	Soybean	nucleus	37.29	36.07
KRH56460	Soybean	nucleus	33.05	35.14
KRH21150	Soybean	nucleus	36.02	34.98
KRG91419	Soybean	nucleus	33.9	34.78
KRH74451	Soybean	nucleus	32.63	34.68
KRG98899	Soybean	nucleus	36.02	34.55
KRH73684	Soybean	nucleus	36.02	34.55
KRH46066	Soybean	nucleus	36.02	34.41
KRH42930	Soybean	nucleus	35.17	34.16
KRH35403	Soybean	nucleus	33.47	34.05
KRH39494	Soybean	nucleus	31.78	33.94
KRH10635	Soybean	nucleus	35.59	33.73
KRH42051	Soybean	nucleus	31.36	33.48
Zm00001d023736_P001	Maize	nucleus	36.44	33.46
KRH59043	Soybean	nucleus	33.9	32.92
KRH42047	Soybean	nucleus	33.47	32.78
KRH16883	Soybean	nucleus	33.05	32.64
KRH72490	Soybean	nucleus	32.2	31.28
KRH11095	Soybean	nucleus	17.8	25.15
KRH21716	Soybean	nucleus	18.64	23.04
KRH64830	Soybean	nucleus	15.25	22.36
KRH66116	Soybean	nucleus, plastid	4.24	12.66

Protein Annotations

EntrezGene:100783045	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02005212	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G269800
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1KX10	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EnsemblPlants:KRH45412	ProteinID:KRH45412	ProteinID:KRH45412.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002338403
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:34809754..34816757

Molecular Weight (calculated)

27430.0 Da

IEP (calculated)

8.584

GRAVY (calculated)

-0.692

Length

236 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD SCMEKILERY ERYAYAERQL VANDSETQGN WTIEYTRLKA
101: KIDLLQRNHR HYMGEDLGSM SLKELQSLEQ QLDTALKQIR TRRNQLMYES ISELEKKEKV IQEQNNMLAK KIKEKEKVAA SQAQWEHPNH GVNASFLLPQ
201: PLLNMGGNYH DEAPEVGRHE LDLTLEPLYS CHLGCF

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.