Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G281000.1 | Wheat | nucleus | 98.91 | 98.91 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 97.81 | 98.89 |
| KRH75125 | Soybean | nucleus | 20.8 | 93.44 |
| Os07t0108900-02 | Rice | nucleus | 86.5 | 88.76 |
| EER95753 | Sorghum | nucleus | 86.13 | 87.41 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 96.35 | 86.27 |
| Zm00001d018667_P003 | Maize | nucleus | 84.67 | 85.61 |
| Zm00001d007949_P001 | Maize | nucleus | 85.04 | 76.39 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 64.6 | 72.54 |
| CDY19977 | Canola | nucleus | 23.36 | 62.75 |
| Bra004361.1-P | Field mustard | nucleus | 42.7 | 61.9 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 54.38 | 61.83 |
| KRH07467 | Soybean | nucleus | 52.55 | 61.02 |
| KRH45412 | Soybean | nucleus | 51.46 | 59.75 |
| Solyc05g056620.1.1 | Tomato | nucleus | 51.82 | 58.2 |
| PGSC0003DMT400072888 | Potato | nucleus | 51.82 | 58.2 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 51.46 | 58.02 |
| Solyc06g069430.2.1 | Tomato | nucleus | 51.82 | 57.96 |
| Solyc03g114830.2.1 | Tomato | nucleus | 52.19 | 57.89 |
| KRH70974 | Soybean | nucleus | 51.09 | 57.61 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 51.82 | 57.49 |
| Bra025411.1-P | Field mustard | nucleus | 36.86 | 57.39 |
| PGSC0003DMT400063313 | Potato | nucleus | 51.46 | 56.85 |
| PGSC0003DMT400010451 | Potato | nucleus | 51.46 | 56.4 |
| CDY34564 | Canola | nucleus | 44.16 | 55.5 |
| CDY36077 | Canola | nucleus | 44.53 | 55.2 |
| CDY58690 | Canola | nucleus | 48.18 | 54.77 |
| KRH03173 | Soybean | nucleus | 47.45 | 54.39 |
| Bra029347.1-P | Field mustard | nucleus | 47.45 | 54.17 |
| CDY42841 | Canola | nucleus | 47.45 | 54.17 |
| AT5G60910.1 | Thale cress | nucleus | 47.81 | 54.13 |
| Bra012997.1-P | Field mustard | nucleus | 47.08 | 53.53 |
| CDY02185 | Canola | nucleus | 47.08 | 53.53 |
| AT1G69120.1 | Thale cress | nucleus | 50.0 | 53.52 |
| KRH63171 | Soybean | nucleus | 47.45 | 53.28 |
| CDX95960 | Canola | nucleus | 49.63 | 53.12 |
| KRH56774 | Soybean | nucleus | 47.08 | 52.87 |
| CDY65811 | Canola | nucleus | 49.27 | 52.73 |
| Bra038326.1-P | Field mustard | nucleus | 49.27 | 52.73 |
| CDY33554 | Canola | nucleus | 49.27 | 52.73 |
| Bra035952.1-P | Field mustard | nucleus | 46.35 | 52.7 |
| CDY16832 | Canola | nucleus | 46.35 | 52.7 |
| PGSC0003DMT400003485 | Potato | nucleus | 47.45 | 52.63 |
| PGSC0003DMT400068325 | Potato | nucleus | 44.89 | 52.56 |
| KRH54740 | Soybean | nucleus | 46.72 | 52.46 |
| Solyc02g089210.2.1 | Tomato | nucleus | 47.81 | 52.4 |
| CDY47002 | Canola | nucleus | 45.62 | 51.87 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 50.37 | 51.69 |
| Solyc02g065730.1.1 | Tomato | nucleus | 43.43 | 50.85 |
| AT1G26310.1 | Thale cress | nucleus | 46.72 | 50.2 |
| Bra011021.1-P | Field mustard | nucleus | 46.35 | 50.0 |
| Bra004007.1-P | Field mustard | nucleus | 48.54 | 49.08 |
| CDY04265 | Canola | nucleus | 49.27 | 48.74 |
| KRH45099 | Soybean | nucleus | 43.8 | 48.39 |
| CDY07357 | Canola | nucleus | 49.63 | 47.06 |
| KRG93701 | Soybean | nucleus | 41.61 | 46.72 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 38.32 | 46.26 |
| KRH18331 | Soybean | nucleus | 40.51 | 45.49 |
| Bra036201.1-P | Field mustard | nucleus | 40.88 | 45.16 |
| CDY00082 | Canola | nucleus | 40.88 | 45.16 |
| KRH01382 | Soybean | nucleus | 41.61 | 45.06 |
| CDX86353 | Canola | nucleus | 40.88 | 44.98 |
| AT3G30260.1 | Thale cress | nucleus | 40.51 | 44.58 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 36.86 | 44.49 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 40.15 | 44.35 |
| CDY45899 | Canola | nucleus | 40.15 | 44.18 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 39.42 | 42.86 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 25.18 | 40.59 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 34.67 | 39.92 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 28.1 | 38.89 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 32.85 | 38.79 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 40.51 | 38.28 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 33.21 | 37.6 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 31.39 | 35.68 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 31.02 | 35.42 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 29.2 | 34.78 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 29.2 | 34.78 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 32.12 | 34.65 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 29.93 | 33.74 |
| CDX85287 | Canola | nucleus | 22.99 | 33.69 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 28.1 | 32.35 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 30.29 | 30.86 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 30.66 | 30.77 |
| CDY35780 | Canola | nucleus | 21.9 | 30.46 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 28.47 | 28.36 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 21.9 | 27.4 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF275 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS2A01G261200 | EnsemblPlants:TraesCS2A01G261200.2 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:411943858..411950117
Molecular Weight (calculated)
31293.3 Da
IEP (calculated)
9.495
GRAVY (calculated)
-0.876
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSP KGKLYEYATD SSMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA
101: KIETIQKCHK HLMGEDLDSL NLKELQQLEQ QLESSLKHIR SRKSHLMMES ISELQKKERS LQEENKALQK ELVERQKAAA SRQQQQQQQQ MQWEHQAQTQ
201: THAHTQNQPQ AQTSSSSSSF MMRDQQAHAP QQNICSYPPV TMGGEAAAAA AAPGQQAQLR IGGLPPWMLS HLNA
101: KIETIQKCHK HLMGEDLDSL NLKELQQLEQ QLESSLKHIR SRKSHLMMES ISELQKKERS LQEENKALQK ELVERQKAAA SRQQQQQQQQ MQWEHQAQTQ
201: THAHTQNQPQ AQTSSSSSSF MMRDQQAHAP QQNICSYPPV TMGGEAAAAA AAPGQQAQLR IGGLPPWMLS HLNA
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.