Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G140200.2 | Wheat | nucleus | 97.44 | 97.08 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 95.6 | 96.31 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 93.77 | 82.58 |
| Os01t0201700-02 | Rice | nucleus | 81.32 | 80.43 |
| EES00105 | Sorghum | nucleus | 75.46 | 76.58 |
| Zm00001d039434_P001 | Maize | nucleus | 71.79 | 74.81 |
| GSMUA_Achr10P... | Banana | nucleus | 58.97 | 70.31 |
| KRH14461 | Soybean | nucleus | 26.37 | 69.23 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 56.41 | 68.14 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 64.47 | 65.43 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 58.61 | 62.99 |
| CDY09267 | Canola | nucleus | 56.04 | 61.45 |
| PGSC0003DMT400073134 | Potato | nucleus | 55.68 | 61.29 |
| Solyc02g071730.2.1 | Tomato | nucleus | 55.31 | 60.89 |
| AT4G18960.1 | Thale cress | nucleus | 56.04 | 60.71 |
| CDX98597 | Canola | nucleus | 55.31 | 60.16 |
| Bra012564.1-P | Field mustard | nucleus | 55.31 | 60.16 |
| KRH21150 | Soybean | nucleus | 53.48 | 60.08 |
| CDX78909 | Canola | nucleus | 54.95 | 59.52 |
| Bra013364.1-P | Field mustard | nucleus | 54.95 | 59.52 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 54.58 | 58.66 |
| KRH42930 | Soybean | nucleus | 52.01 | 58.44 |
| KRH46066 | Soybean | nucleus | 52.75 | 58.3 |
| KRG98899 | Soybean | nucleus | 52.38 | 58.13 |
| KRH59043 | Soybean | nucleus | 51.28 | 57.61 |
| KRH73684 | Soybean | nucleus | 50.92 | 56.5 |
| Bra004716.1-P | Field mustard | nucleus | 49.82 | 55.74 |
| CDX79857 | Canola | nucleus | 49.82 | 55.74 |
| CDX98330 | Canola | nucleus | 50.18 | 55.24 |
| Bra007419.1-P | Field mustard | nucleus | 49.08 | 54.69 |
| Bra014552.1-P | Field mustard | nucleus | 49.45 | 54.44 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 54.58 | 54.38 |
| AT2G42830.2 | Thale cress | nucleus | 48.72 | 53.63 |
| Solyc07g055920.2.1 | Tomato | nucleus | 52.38 | 53.56 |
| PGSC0003DMT400044552 | Potato | nucleus | 49.45 | 53.15 |
| GSMUA_Achr10P... | Banana | nucleus | 61.54 | 52.66 |
| Zm00001d008882_P001 | Maize | nucleus | 63.0 | 52.28 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 50.18 | 49.82 |
| CDY49254 | Canola | nucleus | 49.82 | 49.45 |
| CDX89005 | Canola | nucleus | 49.08 | 48.55 |
| AT3G58780.4 | Thale cress | nucleus | 49.82 | 48.4 |
| CDY00589 | Canola | nucleus | 48.72 | 48.36 |
| CDX99406 | Canola | nucleus | 54.95 | 48.08 |
| Bra003356.1-P | Field mustard | nucleus | 45.79 | 45.79 |
| CDX67765 | Canola | nucleus | 50.55 | 39.66 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 24.18 | 38.82 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 27.11 | 37.37 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 31.14 | 36.64 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 30.4 | 36.56 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 30.04 | 36.12 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 31.5 | 35.68 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 30.04 | 35.65 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 29.67 | 35.22 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 31.14 | 35.12 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 31.5 | 34.13 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 29.67 | 34.03 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 29.67 | 34.03 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 30.04 | 33.74 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 29.3 | 33.33 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 29.67 | 32.66 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 28.57 | 31.97 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 33.7 | 31.72 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 30.77 | 30.66 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 28.94 | 29.59 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 17.22 | 21.46 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF332 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS3A01G314300 | EnsemblPlants:TraesCS3A01G314300.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:555035572..555042747
Molecular Weight (calculated)
30916.5 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.749
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSMMADLSC GASGVTVNDH QLAAPAPEDS AAAGSEKMGR GRIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK
101: ATIERYKKAN SDTSNSGTVA EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK NELMYAEVEY MQKREMELQN
201: DNIYLRSKVS ENERGQQPVN MMASGSASSE YDHMVSPYDS RNFLQANIMQ QQQQHYSQQL QPTALQLGQQ YFN
101: ATIERYKKAN SDTSNSGTVA EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK NELMYAEVEY MQKREMELQN
201: DNIYLRSKVS ENERGQQPVN MMASGSASSE YDHMVSPYDS RNFLQANIMQ QQQQHYSQQL QPTALQLGQQ YFN
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.