Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G343900.1 | Wheat | cytosol | 99.56 | 99.56 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 99.56 | 99.56 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 93.42 | 92.61 |
| Zm00001d018142_P001 | Maize | nucleus | 89.04 | 91.86 |
| KXG31156 | Sorghum | nucleus | 91.23 | 91.23 |
| Zm00001d052180_P001 | Maize | nucleus | 87.28 | 90.05 |
| Os02t0761000-01 | Rice | nucleus | 85.96 | 85.96 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 77.19 | 73.33 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 18.42 | 66.67 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 17.98 | 66.13 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 17.54 | 65.57 |
| KRH62216 | Soybean | nucleus | 18.86 | 65.15 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 64.47 | 64.19 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 17.54 | 61.54 |
| GSMUA_Achr10P... | Banana | nucleus | 59.65 | 59.65 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 24.12 | 58.51 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 56.14 | 56.39 |
| KRH74496 | Soybean | nucleus | 53.51 | 53.74 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 20.18 | 53.49 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 17.54 | 53.33 |
| KRH69674 | Soybean | nucleus | 53.07 | 53.3 |
| CDY13746 | Canola | nucleus | 54.82 | 52.97 |
| PGSC0003DMT400041773 | Potato | nucleus | 55.26 | 52.94 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 37.72 | 52.76 |
| CDX76906 | Canola | nucleus | 54.39 | 52.54 |
| AT2G22540.1 | Thale cress | nucleus | 55.26 | 52.5 |
| Bra038511.1-P | Field mustard | nucleus | 55.26 | 52.28 |
| Bra030228.1-P | Field mustard | nucleus | 53.07 | 51.27 |
| CDX89487 | Canola | nucleus | 52.63 | 50.85 |
| PGSC0003DMT400024247 | Potato | nucleus | 50.44 | 48.94 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 62.72 | 48.64 |
| Solyc11g010570.1.1 | Tomato | nucleus | 56.14 | 48.3 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 37.72 | 47.78 |
| KRH52935 | Soybean | nucleus | 48.25 | 47.01 |
| CDY11019 | Canola | nucleus | 44.3 | 46.76 |
| Bra019221.1-P | Field mustard | nucleus | 44.3 | 46.76 |
| CDY03445 | Canola | nucleus | 44.74 | 46.15 |
| AT4G24540.1 | Thale cress | nucleus | 44.3 | 45.91 |
| KRH42097 | Soybean | nucleus | 41.23 | 45.85 |
| KRH49819 | Soybean | nucleus | 40.35 | 44.66 |
| CDX92641 | Canola | nucleus | 44.3 | 44.1 |
| PGSC0003DMT400083739 | Potato | nucleus | 42.54 | 43.89 |
| KRH10603 | Soybean | nucleus | 38.6 | 42.31 |
| KRH21764 | Soybean | nucleus | 36.84 | 40.78 |
| CDY25607 | Canola | nucleus | 31.14 | 40.57 |
| Solyc04g076280.2.1 | Tomato | vacuole | 34.65 | 40.51 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 29.82 | 37.16 |
| KRH10606 | Soybean | nucleus | 34.21 | 36.97 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 50.88 | 36.25 |
| Solyc01g105800.2.1 | Tomato | nucleus | 41.67 | 34.05 |
| KRH21757 | Soybean | nucleus | 35.09 | 32.26 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF171 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6A01G313800 | EnsemblPlants:TraesCS6A01G313800.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr6A:-:550637582..550643621
Molecular Weight (calculated)
25438.1 Da
IEP (calculated)
5.717
GRAVY (calculated)
-0.611
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS SMNEIIDKYS THSKNLGKTD QPALDLNLEH SKYANLNDQL
101: AEASLRLRQM RGEELEGLSV DELQQLEKNL ETGLHRVLQT KDQQFLEQIN ELHRKSSQLA EENMKLRNQV GQIPTAGKLV VADTENVVAE DGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL GLPCLPWK
101: AEASLRLRQM RGEELEGLSV DELQQLEKNL ETGLHRVLQT KDQQFLEQIN ELHRKSSQLA EENMKLRNQV GQIPTAGKLV VADTENVVAE DGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL GLPCLPWK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.