Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G068220.3 | Barley | cytosol | 29.66 | 48.86 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.66 | 43.43 |
| TraesCS2B01G012800.1 | Wheat | cytosol, mitochondrion, nucleus | 36.55 | 43.09 |
| Os04t0118500-01 | Rice | plastid | 31.72 | 37.4 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 30.34 | 35.48 |
| GSMUA_Achr11P... | Banana | nucleus | 26.21 | 32.2 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 25.52 | 31.36 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 24.83 | 30.51 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 24.14 | 29.41 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 24.14 | 29.41 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 24.14 | 29.41 |
| Solyc01g110530.2.1 | Tomato | plastid | 23.45 | 28.81 |
| PGSC0003DMT400004094 | Potato | nucleus | 23.45 | 28.81 |
| Bra024480.1-P | Field mustard | mitochondrion | 23.45 | 28.57 |
| CDY20906 | Canola | mitochondrion | 23.45 | 28.57 |
| KRH08096 | Soybean | cytosol | 24.14 | 27.78 |
| CDY29218 | Canola | mitochondrion | 22.76 | 27.73 |
| PGSC0003DMT400051327 | Potato | nucleus | 24.14 | 27.56 |
| Solyc02g062250.2.1 | Tomato | nucleus | 24.14 | 27.56 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 34.48 | 27.47 |
| KRH69799 | Soybean | cytosol | 23.45 | 26.98 |
| AT2G18040.1 | Thale cress | mitochondrion | 22.07 | 26.89 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 25.52 | 14.92 |
| CDX87855 | Canola | nucleus | 24.14 | 9.36 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G513900.1 | EnsemblPlantsGene:TraesCS5B01G513900 | Gene3D:3.10.50.40 | SEG:seg | SUPFAM:SSF54534 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:+:679009453..679022524
Molecular Weight (calculated)
16317.5 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.802
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSPPPTAP PLLCYPQHEE PTSRSNRGGK RRKDGEMASA ATVKEMGRVS CIWIKHEEER REASWKEPEG RVFSATTRTD VATLLGEPRD QILAGRASFA
101: DLVAQHRLLG TETNSTSRSA LVDLTTLRRC STKCKAREKL EMRHR
101: DLVAQHRLLG TETNSTSRSA LVDLTTLRRC STKCKAREKL EMRHR
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.