Factsheet for Solyc01g110530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g076280.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	Solyc10g017640.1.1	AT2G45660.1	20129060
AT2G18040.1	Solyc04g076280.2.1	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004094	Potato	nucleus	97.46	97.46
VIT_04s0023g03190.t01	Wine grape	cytosol	78.81	78.81
GSMUA_Achr8P19300_001	Banana	cytosol	77.97	77.97
GSMUA_Achr11P...	Banana	nucleus	76.27	76.27
Bra024480.1-P	Field mustard	mitochondrion	76.27	75.63
CDY25130	Canola	cytosol, mitochondrion, nucleus	76.27	75.63
CDY29218	Canola	mitochondrion	76.27	75.63
Bra039913.1-P	Field mustard	cytosol, mitochondrion, nucleus	75.42	74.79
CDY20906	Canola	mitochondrion	75.42	74.79
CDY38175	Canola	cytosol, mitochondrion, nucleus	75.42	74.79
AT2G18040.1	Thale cress	mitochondrion	75.42	74.79
KRH08096	Soybean	cytosol	79.66	74.6
KRH69799	Soybean	cytosol	78.81	73.81
Os04t0663800-01	Rice	cytosol, nucleus	42.37	69.44
TraesCS2D01G009700.1	Wheat	cytosol	69.49	67.77
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	69.49	67.77
HORVU2Hr1G001350.2	Barley	nucleus	69.49	67.21
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	70.34	66.94
Solyc02g062250.2.1	Tomato	nucleus	71.19	66.14
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	68.64	65.85
Os04t0118500-01	Rice	plastid	67.8	65.04
EES11766	Sorghum	nucleus	67.8	64.52
TraesCS2D01G491300.1	Wheat	mitochondrion	61.02	63.72
HORVU2Hr1G109660.3	Barley	cytosol	24.58	63.04
HORVU5Hr1G121760.1	Barley	cytosol	22.88	48.21
HORVU4Hr1G072290.1	Barley	cytosol	35.59	43.3
HORVU6Hr1G068220.3	Barley	cytosol	32.2	43.18
OQU82515	Sorghum	nucleus	67.8	38.65
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	29.66	35.35
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	31.36	34.58
HORVU3Hr1G096490.2	Barley	cytosol	35.59	30.0
CDX87855	Canola	nucleus	76.27	24.06
TraesCS5B01G513900.1	Wheat	nucleus	28.81	23.45
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	27.97	18.13
OQU79160	Sorghum	cytosol, nucleus, plastid	34.75	16.53

Protein Annotations

MapMan:18.12.4	Gene3D:3.10.50.40	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005829	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0032880	InterPro:IPR000297	UniProt:K4B3R6	PFAM:PF00639	InterPro:PPIase_PpiC	InterPro:PPIase_PpiC_CS
ScanProsite:PS01096	PFscan:PS50198	PANTHER:PTHR10657	PANTHER:PTHR10657:SF4	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc01g110530.2
EnsemblPlants:Solyc01g110530.2.1	UniParc:UPI0001765026	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4B3R6]

Coordinates

chr1:-:97198594..97201614

Molecular Weight (calculated)

12886.1 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.539

Length

118 amino acids

Sequence
(BLAST)

001: MASNQVRASH ILIKHEGSRR KSSWKDPEGR IICNTTRDAA ASQLKSFRDD IISGKSKFED VASRFSDCSS AKRGGDLGPF GRGQMQKPFE VATYALEVGE
101: ISDIIDTDSG AHIILRTG

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.