Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G012800.1 | Wheat | cytosol, mitochondrion, nucleus | 86.18 | 86.18 |
| TraesCS2D01G009700.1 | Wheat | cytosol | 84.55 | 85.95 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 84.55 | 85.95 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 86.18 | 85.48 |
| HORVU2Hr1G001350.2 | Barley | nucleus | 84.55 | 85.25 |
| EES11766 | Sorghum | nucleus | 83.74 | 83.06 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 73.17 | 76.27 |
| GSMUA_Achr11P... | Banana | nucleus | 71.54 | 74.58 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 66.67 | 68.91 |
| KRH08096 | Soybean | cytosol | 69.92 | 68.25 |
| HORVU5Hr1G121760.1 | Barley | cytosol | 30.89 | 67.86 |
| PGSC0003DMT400004094 | Potato | nucleus | 65.04 | 67.8 |
| Solyc01g110530.2.1 | Tomato | plastid | 65.04 | 67.8 |
| Bra024480.1-P | Field mustard | mitochondrion | 65.04 | 67.23 |
| KRH69799 | Soybean | cytosol | 68.29 | 66.67 |
| Os04t0663800-01 | Rice | cytosol, nucleus | 39.02 | 66.67 |
| AT2G18040.1 | Thale cress | mitochondrion | 64.23 | 66.39 |
| CDY20906 | Canola | mitochondrion | 64.23 | 66.39 |
| CDY29218 | Canola | mitochondrion | 64.23 | 66.39 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 62.6 | 65.25 |
| PGSC0003DMT400051327 | Potato | nucleus | 65.04 | 62.99 |
| HORVU4Hr1G072290.1 | Barley | cytosol | 49.59 | 62.89 |
| HORVU6Hr1G068220.3 | Barley | cytosol | 44.72 | 62.5 |
| Solyc02g062250.2.1 | Tomato | nucleus | 64.23 | 62.2 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 38.21 | 47.47 |
| TraesCS4A01G388100.2 | Wheat | cytosol, mitochondrion, nucleus | 39.02 | 44.86 |
| HORVU3Hr1G096490.2 | Barley | cytosol | 49.59 | 43.57 |
| TraesCS5B01G513900.1 | Wheat | nucleus | 37.4 | 31.72 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 37.4 | 25.27 |
| CDX87855 | Canola | nucleus | 65.04 | 21.39 |
Protein Annotations
| MapMan:18.12.4 | Gene3D:3.10.50.40 | EntrezGene:9266162 | ProteinID:BAS87634.1 | ProteinID:CAE01287.2 | ProteinID:EAZ29504.1 |
| GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR000297 | EnsemblPlantsGene:Os04g0118500 |
| EnsemblPlants:Os04t0118500-01 | PFAM:PF00639 | InterPro:PPIase_PpiC | InterPro:PPIase_PpiC_CS | ScanProsite:PS01096 | PFscan:PS50198 |
| PANTHER:PTHR10657 | PANTHER:PTHR10657:SF4 | UniProt:Q7XTK0 | SUPFAM:SSF54534 | UniParc:UPI00001AE516 | RefSeq:XP_015634007.1 |
| SEG:seg | : | : | : | : | : |
Description
Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (DlPar13). (Os04t0118500-01)
Coordinates
chr4:-:1100312..1102268
Molecular Weight (calculated)
13340.7 Da
IEP (calculated)
9.453
GRAVY (calculated)
-0.474
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSATETET VRALHILIKH EGSRRKASWK DPDGRVISAT TRADAAARLA DLRDQILSGR ANFADLAARH SDCSSARRGG DLGTFGRRQM QKPFEDATFA
101: LKVGEMSDTV DTDSGVHIIL RTA
101: LKVGEMSDTV DTDSGVHIIL RTA
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.