Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g017640.1.1 | Tomato | nucleus | 20.87 | 78.69 |
| KRH48297 | Soybean | nucleus | 29.57 | 76.4 |
| Zm00001d027425_P001 | Maize | nucleus | 71.3 | 71.93 |
| OQU93352 | Sorghum | nucleus | 71.74 | 70.82 |
| Zm00001d048474_P001 | Maize | nucleus | 70.87 | 70.26 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 63.48 | 65.77 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 61.3 | 64.09 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 60.43 | 62.61 |
| Os10t0536100-01 | Rice | nucleus | 62.61 | 61.8 |
| CDY37054 | Canola | nucleus | 52.61 | 56.81 |
| Bra039324.1-P | Field mustard | nucleus | 52.61 | 56.81 |
| KRH00625 | Soybean | nucleus | 50.87 | 55.98 |
| CDY27368 | Canola | nucleus | 51.74 | 55.87 |
| Os03t0834466-00 | Rice | nucleus | 15.65 | 55.38 |
| KRH40554 | Soybean | nucleus | 50.43 | 54.98 |
| AT2G45660.1 | Thale cress | nucleus | 50.87 | 54.67 |
| CDY69077 | Canola | nucleus | 50.43 | 54.46 |
| Bra004928.1-P | Field mustard | nucleus | 50.0 | 53.99 |
| CDX74755 | Canola | nucleus | 50.0 | 53.99 |
| Bra000393.1-P | Field mustard | nucleus | 50.0 | 53.99 |
| CDY60689 | Canola | nucleus | 49.57 | 53.52 |
| CDY53886 | Canola | nucleus | 49.57 | 53.52 |
| PGSC0003DMT400000028 | Potato | nucleus | 50.43 | 51.79 |
| PGSC0003DMT400026576 | Potato | nucleus | 47.83 | 51.4 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 15.22 | 49.3 |
| KRH65189 | Soybean | nucleus | 47.83 | 46.41 |
| Os06t0108500-01 | Rice | nucleus | 40.0 | 43.19 |
| Os01t0922800-01 | Rice | nucleus | 26.09 | 36.59 |
| KRH48299 | Soybean | nucleus | 21.74 | 36.5 |
| Os08t0531900-01 | Rice | nucleus | 26.96 | 33.88 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4331445 | ProteinID:AAN74833.1 | EMBL:AB003328 | EMBL:AY332476 |
| EMBL:AY551914 | ProteinID:BAF10715.1 | ProteinID:BAS82045.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os03g0122600 | EnsemblPlants:Os03t0122600-01 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF344 | UniProt:Q9XJ60 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00000A54EC | RefSeq:XP_015630979.1 | : | : | : |
Description
MADS BOX GENE 50MIKC-type MADS-box protein, Flowering time, Short-day/long-day promotion (Os03t0122600-01);Transcription factor, MADS-box domain containing protein. (Os03t0122600-02)
Coordinates
chr3:-:1270328..1300273
Molecular Weight (calculated)
26182.4 Da
IEP (calculated)
9.371
GRAVY (calculated)
-0.823
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA STQKTIERYR TYTKENIGNK TVQQDIEQVK ADADGLAKKL
101: EALETYKRKL LGEKLDECSI EELHSLEVKL ERSLISIRGR KTKLLEEQVA KLREKEMKLR KDNEELREKC KNQPPLSAPL TVRAEDENPD RNINTTNDNM
201: DVETELFIGL PGRSRSSGGA AEDSQAMPHS
101: EALETYKRKL LGEKLDECSI EELHSLEVKL ERSLISIRGR KTKLLEEQVA KLREKEMKLR KDNEELREKC KNQPPLSAPL TVRAEDENPD RNINTTNDNM
201: DVETELFIGL PGRSRSSGGA AEDSQAMPHS
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.