Factsheet for Os03t0215400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0922800-01
Os03t0122600-01
Os03t0582400-01
Os03t0743500-02
Os03t0752800-02
Os06t0108500-01
Os06t0223300-01
Os07t0108900-02
Os07t0605200-01
Os08t0494100-02
Os08t0531900-01
Os10t0536100-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Os03t0582400-01	AT1G31630.1	15805477
AT2G03710.1	Os03t0582400-01	AT1G31640.1	15805477
AT2G03710.1	Os03t0752800-02	AT1G69120.1	15805477
AT2G03710.1	Os07t0108900-02	AT1G69120.1	15805477
AT2G03710.1	Os07t0605200-01	AT1G69120.1	15805477
AT2G03710.1	Os12t0501700-00	AT1G69120.1	15805477
AT2G03710.1	Os06t0223300-01	AT1G77980.1	15805477
AT2G03710.1	Os08t0494100-02	AT1G77980.1	15805477
AT2G03710.1	Os01t0922800-01	AT2G45660.1	15805477
AT2G03710.1	Os03t0122600-01	AT2G45660.1	15805477
AT2G03710.1	Os06t0108500-01	AT2G45660.1	15805477
AT2G03710.1	Os08t0531900-01	AT2G45660.1	15805477
AT2G03710.1	Os10t0536100-01	AT2G45660.1	15805477
AT2G03710.1	Os03t0743500-02	AT4G14640.1	17360592
AT2G03710.1	Os03t0752800-02	AT5G60910.1	15805477
AT2G03710.1	Os07t0108900-02	AT5G60910.1	15805477
AT2G03710.1	Os07t0605200-01	AT5G60910.1	15805477
AT2G03710.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93000	Sorghum	nucleus	75.88	80.25
Os06t0162800-01	Rice	nucleus	67.32	76.89
Zm00001d048082_P001	Maize	nucleus	75.1	76.59
TraesCS4B01G245700.1	Wheat	nucleus	64.2	76.39
TraesCS4D01G243700.1	Wheat	nucleus	66.54	76.0
Zm00001d028217_P001	Maize	nucleus	72.76	72.48
TraesCS4A01G058900.1	Wheat	nucleus	47.86	72.35
TraesCS4D01G245200.1	Wheat	nucleus	66.54	68.95
TraesCS4B01G245800.1	Wheat	nucleus	64.2	66.8
TraesCS4A01G028200.1	Wheat	nucleus	58.37	64.66
TraesCS4D01G276100.1	Wheat	nucleus	59.53	63.49
TraesCS4A01G028100.1	Wheat	nucleus	59.14	62.81
TraesCS4B01G277800.1	Wheat	nucleus	58.75	61.13
GSMUA_Achr7P26700_001	Banana	nucleus	52.92	57.14
GSMUA_Achr4P14460_001	Banana	nucleus	51.36	55.0
Solyc03g114840.2.1	Tomato	nucleus	52.53	54.88
PGSC0003DMT400063315	Potato	nucleus	52.14	54.47
VIT_17s0000g05000.t01	Wine grape	nucleus	51.75	54.06
Os03t0753100-01	Rice	nucleus	49.42	53.14
KRH70973	Soybean	nucleus	49.03	51.64
KRH75123	Soybean	nucleus	48.64	50.81
Os09t0507200-01	Rice	nucleus	49.03	50.81
Os02t0682200-01	Rice	nucleus	48.25	49.6
Os08t0531700-01	Rice	nucleus	47.86	49.4
HORVU4Hr1G067680.14	Barley	nucleus	54.47	49.3
Os04t0580700-01	Rice	nucleus	48.64	49.21
Bra025126.1-P	Field mustard	nucleus	46.69	46.69
CDY51202	Canola	nucleus	46.69	46.69
CDY02978	Canola	nucleus	46.3	46.48
AT2G03710.1	Thale cress	nucleus	46.3	46.12
CDY04164	Canola	nucleus	46.3	46.12
Bra026543.1-P	Field mustard	nucleus	47.86	45.72
Os08t0431900-00	Rice	nucleus	28.02	45.28
Os06t0347700-00	Rice	nucleus	24.12	42.18
Os03t0752800-02	Rice	nucleus	39.69	41.46
Bra017376.1-P	Field mustard	nucleus	38.52	40.74
Os07t0605200-01	Rice	nucleus	38.52	39.76
CDY33113	Canola	nucleus	46.3	38.51
Os07t0108900-02	Rice	nucleus	39.3	37.83
Os02t0579600-00	Rice	nucleus	31.91	34.17
CDY45709	Canola	nucleus	22.96	34.1
CDY49686	Canola	nucleus	22.57	33.53
Os04t0304400-01	Rice	nucleus	29.57	33.48
Os12t0501700-00	Rice	nucleus	30.35	33.48
Os02t0731200-01	Rice	nucleus	30.74	32.78
Os01t0886200-01	Rice	nucleus	32.68	31.7
Os01t0201700-02	Rice	nucleus	33.85	31.52
Os12t0207000-01	Rice	nucleus	33.07	31.48
Os05t0203800-02	Rice	nucleus	32.68	30.88

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4332059	ProteinID:AAG35652.1	ProteinID:ABF94637.1	EMBL:AC105732
EMBL:AC135158	EMBL:AK069728	ProteinID:BAF11290.1	ProteinID:BAS82963.1	ncoils:Coil	ProteinID:EEE58586.1
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008134	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0010022	GO:GO:0010093	GO:GO:0010582	GO:GO:0030154	GO:GO:0045944	GO:GO:0046983
GO:GO:0048509	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EMBL:L34271	InterPro:MADS_MEF2-like
EnsemblPlantsGene:Os03g0215400	EnsemblPlants:Os03t0215400-01	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF206	UniProt:Q10PZ9	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000ACC35	RefSeq:XP_015628585.1
SEG:seg	:	:	:	:	:

Description

LEAFY HULL STERILE 1MADS-domain-containing protein, Sexual reproduction (Os03t0215400-01)

Coordinates

chr3:-:6052902..6061365

Molecular Weight (calculated)

29529.9 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.791

Length

257 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY RSCNYNSQDA AAPENEINYQ EYLKLKTRVE
101: FLQTTQRNIL GEDLGPLSMK ELEQLENQIE VSLKQIRSRK NQALLDQLFD LKSKEQQLQD LNKDLRKKLQ ETSAENVLHM SWQDGGGHSG SSTVLADQPH
201: HHQGLLHPHP DQGDHSLQIG YHHPHAHHHQ AYMDHLSNEA ADMVAHHPNE HIPSGWI

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.