Factsheet for Zm00001d048082_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007949_P001
Zm00001d013259_P002
Zm00001d013792_P001
Zm00001d016791_P001
Zm00001d018667_P003
Zm00001d022088_P004
Zm00001d023736_P001
Zm00001d027425_P001
Zm00001d031625_P001
Zm00001d033980_P001
Zm00001d034045_P003
Zm00001d037212_P001
Zm00001d039913_P002
Zm00001d042315_P001
Zm00001d044850_P001
Zm00001d047355_P001
Zm00001d047356_P002
Zm00001d048474_P001
Zm00001d048894_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Zm00001d013792_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d016791_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d048894_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d013792_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d016791_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d048894_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d007949_P001	AT1G69120.1	15805477
AT2G03710.1	Zm00001d013259_P002	AT1G69120.1	15805477
AT2G03710.1	Zm00001d018667_P003	AT1G69120.1	15805477
AT2G03710.1	Zm00001d022088_P004	AT1G69120.1	15805477
AT2G03710.1	Zm00001d023736_P001	AT1G69120.1	15805477
AT2G03710.1	Zm00001d034045_P003	AT1G69120.1	15805477
AT2G03710.1	Zm00001d037212_P001	AT1G77980.1	15805477
AT2G03710.1	Zm00001d044850_P001	AT1G77980.1	15805477
AT2G03710.1	Zm00001d027425_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d031625_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d039913_P002	AT2G45660.1	15805477
AT2G03710.1	Zm00001d042315_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d047355_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d047356_P002	AT2G45660.1	15805477
AT2G03710.1	Zm00001d048474_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G03710.1	Zm00001d007949_P001	AT5G60910.1	15805477
AT2G03710.1	Zm00001d013259_P002	AT5G60910.1	15805477
AT2G03710.1	Zm00001d018667_P003	AT5G60910.1	15805477
AT2G03710.1	Zm00001d022088_P004	AT5G60910.1	15805477
AT2G03710.1	Zm00001d023736_P001	AT5G60910.1	15805477
AT2G03710.1	Zm00001d034045_P003	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93000	Sorghum	nucleus	86.51	89.71
Zm00001d028217_P001	Maize	nucleus	83.73	81.78
Os03t0215400-01	Rice	nucleus	76.59	75.1
Zm00001d045231_P002	Maize	nucleus	65.87	73.78
TraesCS4B01G245700.1	Wheat	nucleus	63.1	73.61
TraesCS4D01G243700.1	Wheat	nucleus	65.08	72.89
TraesCS4A01G058900.1	Wheat	nucleus	46.83	69.41
TraesCS4D01G245200.1	Wheat	nucleus	66.27	67.34
TraesCS4B01G245800.1	Wheat	nucleus	62.7	63.97
TraesCS4A01G028200.1	Wheat	nucleus	56.35	61.21
TraesCS4D01G276100.1	Wheat	nucleus	57.94	60.58
TraesCS4A01G028100.1	Wheat	nucleus	57.14	59.5
TraesCS4B01G277800.1	Wheat	nucleus	57.54	58.7
GSMUA_Achr7P26700_001	Banana	nucleus	52.78	55.88
TraesCS4A01G078700.1	Wheat	nucleus	47.62	54.79
GSMUA_Achr4P14460_001	Banana	nucleus	50.79	53.33
Zm00001d034047_P007	Maize	nucleus	48.81	51.25
Solyc03g114840.2.1	Tomato	nucleus	49.6	50.81
VIT_17s0000g05000.t01	Wine grape	nucleus	49.6	50.81
PGSC0003DMT400063315	Potato	nucleus	49.21	50.41
Zm00001d003409_P001	Maize	nucleus	17.06	49.43
KRH70973	Soybean	nucleus	47.62	49.18
Zm00001d006094_P001	Maize	nucleus	48.81	49.0
TraesCS7B01G021000.1	Wheat	nucleus	36.11	48.66
KRH75123	Soybean	nucleus	46.83	47.97
Zm00001d021057_P001	Maize	nucleus	46.83	47.77
HORVU4Hr1G067680.14	Barley	nucleus	53.17	47.18
Zm00001d031620_P001	Maize	nucleus	46.83	46.27
CDY51202	Canola	nucleus	45.24	44.36
Bra025126.1-P	Field mustard	nucleus	45.24	44.36
CDY04164	Canola	nucleus	45.24	44.19
CDY02978	Canola	nucleus	44.84	44.14
AT2G03710.1	Thale cress	nucleus	44.84	43.8
Bra026543.1-P	Field mustard	nucleus	46.43	43.49
Zm00001d045227_P001	Maize	nucleus	21.83	40.74
Zm00001d051465_P002	Maize	nucleus	46.03	39.59
Bra017376.1-P	Field mustard	nucleus	37.3	38.68
Zm00001d022088_P004	Maize	nucleus	38.89	37.98
Zm00001d018667_P003	Maize	nucleus	40.08	37.27
CDY33113	Canola	nucleus	44.84	36.57
Zm00001d013259_P002	Maize	nucleus	40.48	36.56
Zm00001d017614_P003	Maize	nucleus	38.1	34.66
Zm00001d034045_P003	Maize	nucleus	38.49	33.33
Zm00001d016957_P003	Maize	nucleus	31.75	33.33
Zm00001d023955_P003	Maize	nucleus	34.92	33.21
Zm00001d039434_P001	Maize	nucleus	34.13	32.82
Zm00001d007949_P001	Maize	nucleus	39.68	32.79
Zm00001d017932_P002	Maize	nucleus	30.56	32.63
Zm00001d042591_P002	Maize	nucleus	34.52	32.46
Zm00001d023736_P001	Maize	nucleus	32.54	31.91
Zm00001d041781_P001	Maize	nucleus	35.71	31.36
CDY45709	Canola	nucleus	21.03	30.64
CDY49686	Canola	nucleus	20.63	30.06
Zm00001d037737_P001	Maize	nucleus	34.13	28.1
Zm00001d050897_P002	Maize	nucleus	32.14	25.63
Zm00001d008882_P001	Maize	nucleus	30.56	23.4

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:541985	UniProt:A0A1D6PGX4	ProteinID:AQL08651.1	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF206	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00084588D5	EnsemblPlantsGene:Zm00001d048082	EnsemblPlants:Zm00001d048082_P001	EnsemblPlants:Zm00001d048082_T001	SEG:seg

Description

Zea mays MADS8Zea mays MADS8

Coordinates

chr9:+:149613002..149621293

Molecular Weight (calculated)

29125.6 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.732

Length

252 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY RSSNYSTQEV KAPLESEINY QDYLKLRTRV
101: DFLQTTQRNI LGEDLGPLSM KELEQLENQI EVSLKHIRSR KNQMLLDQLF DLKSKSCNAE LVLQEQELQD LNKDLRKKCC QLQETSPQNV IHDVSWEEGG
201: HSGSSVLGPF QGLLQHHGND PSLQTRYHQQ AYMDQLNEDM ADPDEHGRSG WI

Best Arabidopsis Sequence Match ( AT1G24260.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.