Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048082_P001 | Maize | nucleus | 89.71 | 86.51 |
| Zm00001d028217_P001 | Maize | nucleus | 90.53 | 85.27 |
| Os03t0215400-01 | Rice | nucleus | 80.25 | 75.88 |
| EER89250 | Sorghum | nucleus | 69.96 | 75.56 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 67.08 | 75.46 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 69.14 | 74.67 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 51.03 | 72.94 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 70.37 | 68.95 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 67.49 | 66.4 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 60.08 | 62.93 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 61.73 | 62.24 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 60.91 | 61.16 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 61.32 | 60.32 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 52.26 | 57.99 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 55.14 | 56.3 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 53.5 | 54.17 |
| KXG37536 | Sorghum | nucleus | 53.5 | 53.94 |
| Solyc03g114840.2.1 | Tomato | nucleus | 53.5 | 52.85 |
| EER97012 | Sorghum | nucleus | 52.67 | 52.67 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 53.09 | 52.44 |
| PGSC0003DMT400063315 | Potato | nucleus | 52.26 | 51.63 |
| KRH70973 | Soybean | nucleus | 51.03 | 50.82 |
| KRH75123 | Soybean | nucleus | 50.21 | 49.59 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 57.2 | 48.94 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 37.45 | 48.66 |
| EES15309 | Sorghum | nucleus | 48.15 | 48.55 |
| EES07448 | Sorghum | nucleus | 48.97 | 46.67 |
| KXG26975 | Sorghum | nucleus | 44.03 | 45.53 |
| CDY51202 | Canola | nucleus | 48.15 | 45.53 |
| Bra025126.1-P | Field mustard | nucleus | 48.15 | 45.53 |
| CDY02978 | Canola | nucleus | 47.74 | 45.31 |
| CDY04164 | Canola | nucleus | 47.74 | 44.96 |
| AT2G03710.1 | Thale cress | nucleus | 47.74 | 44.96 |
| Bra026543.1-P | Field mustard | nucleus | 49.38 | 44.61 |
| EER90862 | Sorghum | nucleus | 41.15 | 40.82 |
| Bra017376.1-P | Field mustard | nucleus | 39.51 | 39.51 |
| EER97510 | Sorghum | nucleus | 40.74 | 39.13 |
| CDY33113 | Canola | nucleus | 48.15 | 37.86 |
| EER95753 | Sorghum | nucleus | 41.56 | 37.41 |
| KXG23502 | Sorghum | nucleus | 32.51 | 35.43 |
| OQU85202 | Sorghum | nucleus | 33.33 | 33.75 |
| OQU80503 | Sorghum | nucleus | 31.28 | 33.19 |
| EES15827 | Sorghum | nucleus | 36.63 | 33.09 |
| CDY45709 | Canola | nucleus | 23.05 | 32.37 |
| EES01878 | Sorghum | nucleus | 36.63 | 32.13 |
| EES00105 | Sorghum | nucleus | 35.39 | 31.97 |
| CDY49686 | Canola | nucleus | 22.63 | 31.79 |
| OQU85464 | Sorghum | nucleus | 31.28 | 31.41 |
| OQU81712 | Sorghum | nucleus | 30.86 | 31.38 |
| OQU77603 | Sorghum | nucleus | 35.8 | 29.79 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:8056887 | UniProt:A0A1Z5SAP8 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010022 | GO:GO:0010093 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048509 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | EnsemblPlants:OQU93000 | ProteinID:OQU93000 | ProteinID:OQU93000.1 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF206 |
| SMART:SM00432 | EnsemblPlantsGene:SORBI_3001G455900 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0001A82871 | RefSeq:XP_002465643.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:73188105..73199446
Molecular Weight (calculated)
28016.2 Da
IEP (calculated)
6.061
GRAVY (calculated)
-0.780
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY RSSNYSSQEV KVPLDSEINY QDYLKLRTRV
101: EFLQTTQRNI LGEDLGPLSM KELEQLENQI ETSLKQIRSR ENQMLLDQLF DLKSKEQELQ DLNKDLRKKL QETSPENVLH VSSWEEGGHS GASGNVLDPY
201: QGLLQHPESD PSLQIGYHQQ AYMDQLNNED MAGPNEHGRS GWI
101: EFLQTTQRNI LGEDLGPLSM KELEQLENQI ETSLKQIRSR ENQMLLDQLF DLKSKEQELQ DLNKDLRKKL QETSPENVLH VSSWEEGGHS GASGNVLDPY
201: QGLLQHPESD PSLQIGYHQQ AYMDQLNNED MAGPNEHGRS GWI
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
Arabidopsis Description
SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.