CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88077
EER90862
EER95753
EER97012
EER97510
EES00105
EES01878
EES07448
EES15309
EES15827
KXG23502
KXG26975
KXG31156
KXG40019
OQU77603
OQU80503
OQU81712
OQU85202
OQU85464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	EES07448	AT2G45650.1	9418042
AT4G18960.1	KXG26975	AT2G45650.1	9418042
AT4G18960.1	EER97012	AT3G02310.1	15604664
AT4G18960.1	EES15309	AT3G02310.1	15604664
AT4G18960.1	EER97012	AT3G02310.1	15805477
AT4G18960.1	EES15309	AT3G02310.1	15805477
AT4G18960.1	EER97012	AT3G02310.1	9418042
AT4G18960.1	EES15309	AT3G02310.1	9418042
AT4G18960.1	OQU80503	AT3G57230.1	15805477
AT4G18960.1	OQU81712	AT3G57230.1	15805477
AT4G18960.1	OQU85202	AT3G57230.1	15805477
AT4G18960.1	OQU85464	AT3G57230.1	15805477
AT4G18960.1	EES07448	AT3G61120.1	15805477
AT4G18960.1	KXG26975	AT3G61120.1	15805477
AT4G18960.1	EES00105	AT4G18960.1	14555696
AT4G18960.1	EES01878	AT4G18960.1	14555696
AT4G18960.1	EES15827	AT4G18960.1	14555696
AT4G18960.1	OQU77603	AT4G18960.1	14555696
AT4G18960.1	EER88077	AT4G24540.1	15805477
AT4G18960.1	KXG31156	AT4G24540.1	15805477
AT4G18960.1	KXG40019	AT4G24540.1	15805477
AT4G18960.1	EER90862	AT5G60910.1	15805477
AT4G18960.1	EER95753	AT5G60910.1	15805477
AT4G18960.1	EER97510	AT5G60910.1	15805477
AT4G18960.1	KXG23502	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023955_P003	Maize	nucleus	92.19	93.58
Zm00001d041781_P001	Maize	nucleus	92.94	87.11
Os12t0207000-01	Rice	nucleus	74.35	74.07
TraesCS5D01G118200.1	Wheat	nucleus	68.77	73.41
TraesCS5B01G115100.1	Wheat	nucleus	68.4	73.02
HORVU1Hr1G023620.1	Barley	nucleus	68.4	73.02
TraesCS5A01G117500.1	Wheat	nucleus	68.03	72.05
KRH14461	Soybean	nucleus	24.54	63.46
VIT_10s0003g02070.t01	Wine grape	nucleus	50.93	60.62
GSMUA_Achr10P...	Banana	nucleus	50.93	59.83
KRH21150	Soybean	nucleus	50.93	56.38
KRG98899	Soybean	nucleus	49.81	54.47
GSMUA_Achr6P14760_001	Banana	nucleus	51.3	54.33
KRH42930	Soybean	nucleus	49.07	54.32
KRH46066	Soybean	nucleus	49.81	54.25
CDX79857	Canola	nucleus	48.33	53.28
Bra004716.1-P	Field mustard	nucleus	48.33	53.28
KRH73684	Soybean	nucleus	48.7	53.25
KRH59043	Soybean	nucleus	47.96	53.09
PGSC0003DMT400073134	Potato	nucleus	48.7	52.82
Bra007419.1-P	Field mustard	nucleus	47.96	52.65
CDX98330	Canola	nucleus	48.33	52.42
Bra014552.1-P	Field mustard	nucleus	48.33	52.42
EES00105	Sorghum	nucleus	52.04	52.04
Solyc02g071730.2.1	Tomato	nucleus	47.96	52.02
AT2G42830.2	Thale cress	nucleus	47.96	52.02
AT4G18960.1	Thale cress	nucleus	47.96	51.19
CDY09267	Canola	nucleus	47.21	51.0
Bra013364.1-P	Field mustard	nucleus	47.21	50.4
CDX78909	Canola	nucleus	47.21	50.4
VIT_12s0142g00360.t01	Wine grape	nucleus	50.93	50.0
EES01878	Sorghum	nucleus	50.93	49.46
Bra012564.1-P	Field mustard	nucleus	46.1	49.4
CDX98597	Canola	nucleus	46.1	49.4
Solyc07g055920.2.1	Tomato	nucleus	46.84	47.19
CDY49254	Canola	nucleus	47.96	46.91
CDX89005	Canola	nucleus	47.96	46.74
AT3G58780.4	Thale cress	nucleus	48.7	46.62
CDY00589	Canola	nucleus	47.58	46.55
PGSC0003DMT400044552	Potato	nucleus	43.87	46.46
Bra003356.1-P	Field mustard	nucleus	44.98	44.32
GSMUA_Achr10P...	Banana	nucleus	51.3	43.26
OQU77603	Sorghum	nucleus	46.47	42.81
CDX99406	Canola	nucleus	47.21	40.71
EER89250	Sorghum	nucleus	33.09	39.56
CDX67765	Canola	nucleus	49.07	37.93
OQU93000	Sorghum	nucleus	33.09	36.63
EES07448	Sorghum	nucleus	34.57	36.47
KXG26975	Sorghum	nucleus	31.6	36.17
OQU85202	Sorghum	nucleus	31.23	35.0
EER97012	Sorghum	nucleus	31.23	34.57
KXG37536	Sorghum	nucleus	30.86	34.44
OQU81712	Sorghum	nucleus	30.48	34.31
EER90862	Sorghum	nucleus	31.23	34.29
OQU85464	Sorghum	nucleus	30.48	33.88
OQU80503	Sorghum	nucleus	28.62	33.62
EER95753	Sorghum	nucleus	33.09	32.96
EES15309	Sorghum	nucleus	29.37	32.78
EER97510	Sorghum	nucleus	29.37	31.23
KXG23502	Sorghum	nucleus	23.79	28.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8082822	UniProt:C5YTL7	ncoils:Coil	EnsemblPlants:EES15827
ProteinID:EES15827	ProteinID:EES15827.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048283	GO:GO:0048481	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF357	SMART:SM00432
EnsemblPlantsGene:SORBI_3008G072900	SUPFAM:SSF55455	unigene:Sbi.12481	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001A8806E	RefSeq:XP_002441989.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:10080024..10086057

Molecular Weight (calculated)

30380.4 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.535

Length

269 amino acids

Sequence
(BLAST)

001: MGRGRIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKATIERYK KVHTVGSSSG PPLLEHNAQQ FYQQESAKLR
101: NQIQMLQNTN RHLVGDSVGN LTLKELKQLE SRLEKGISKV RARKNELLAA EINYMAKRET ELQNDHMNLR TKIEEGEQQL QQVTVARSVA AAAAATNVEL
201: NPFLEMDTKC FFPGGPFATL DMKCFFPGGY QMLEATAAQH RQMLTTELNL GYQLALPNSD AANNNPHQF

Best Arabidopsis Sequence Match ( AT2G42830.1 )
(BLAST)

001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV

Arabidopsis Description

SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.