Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014552.1-P | Field mustard | nucleus | 88.0 | 97.58 |
| CDX98330 | Canola | nucleus | 84.0 | 93.15 |
| CDX89005 | Canola | nucleus | 89.82 | 89.49 |
| CDX71922 | Canola | nucleus | 42.91 | 87.41 |
| CDY72391 | Canola | nucleus | 23.64 | 86.67 |
| CDY49254 | Canola | nucleus | 82.91 | 82.91 |
| CDX79857 | Canola | nucleus | 72.36 | 81.56 |
| AT3G58780.4 | Thale cress | nucleus | 82.55 | 80.78 |
| CDX79856 | Canola | nucleus | 25.82 | 79.78 |
| KRH14461 | Soybean | nucleus | 28.36 | 75.0 |
| CDX67765 | Canola | nucleus | 84.36 | 66.67 |
| KRG98899 | Soybean | nucleus | 57.82 | 64.63 |
| KRH46066 | Soybean | nucleus | 57.82 | 64.37 |
| KRH73684 | Soybean | nucleus | 56.36 | 63.01 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 38.55 | 60.57 |
| GSMUA_Achr10P... | Banana | nucleus | 49.45 | 59.39 |
| Solyc07g055920.2.1 | Tomato | nucleus | 56.36 | 58.05 |
| CDY09267 | Canola | nucleus | 52.36 | 57.83 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 57.45 | 57.66 |
| CDX78909 | Canola | nucleus | 52.36 | 57.14 |
| CDX98597 | Canola | nucleus | 52.0 | 56.97 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 13.82 | 56.72 |
| PGSC0003DMT400044552 | Potato | nucleus | 52.36 | 56.69 |
| CDX90741 | Canola | nucleus | 44.73 | 53.25 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 49.09 | 53.15 |
| Zm00001d039434_P001 | Maize | nucleus | 48.73 | 51.15 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 46.55 | 50.79 |
| EES00105 | Sorghum | nucleus | 49.09 | 50.19 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 45.45 | 50.0 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 45.82 | 49.61 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 45.45 | 49.6 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 45.45 | 49.6 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 48.73 | 49.45 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 45.45 | 49.02 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 48.36 | 48.72 |
| Zm00001d023955_P003 | Maize | nucleus | 46.91 | 48.68 |
| Os01t0201700-02 | Rice | nucleus | 48.73 | 48.55 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 48.36 | 48.54 |
| Os05t0203800-02 | Rice | nucleus | 47.64 | 48.16 |
| Os12t0207000-01 | Rice | nucleus | 46.91 | 47.78 |
| EES15827 | Sorghum | nucleus | 46.55 | 47.58 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 46.55 | 47.58 |
| Zm00001d042591_P002 | Maize | nucleus | 46.18 | 47.39 |
| CDY13236 | Canola | mitochondrion | 34.55 | 47.26 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 46.18 | 47.21 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 46.18 | 47.21 |
| Os01t0886200-01 | Rice | nucleus | 44.73 | 46.42 |
| EES01878 | Sorghum | nucleus | 46.18 | 45.85 |
| CDX99406 | Canola | nucleus | 52.0 | 45.83 |
| Zm00001d041781_P001 | Maize | nucleus | 47.27 | 45.3 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 45.09 | 45.09 |
| CDY01574 | Canola | nucleus | 19.64 | 43.9 |
| CDY48451 | Canola | nucleus | 24.36 | 43.79 |
| GSMUA_Achr10P... | Banana | nucleus | 50.55 | 43.57 |
| CDY19977 | Canola | nucleus | 16.0 | 43.14 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 48.36 | 42.9 |
| CDY65347 | Canola | nucleus | 24.36 | 42.41 |
| OQU77603 | Sorghum | nucleus | 44.36 | 41.78 |
| Zm00001d037737_P001 | Maize | nucleus | 46.18 | 41.5 |
| CDY60297 | Canola | nucleus | 44.0 | 41.44 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 46.91 | 39.57 |
| Zm00001d008882_P001 | Maize | nucleus | 44.0 | 36.78 |
| CDY34564 | Canola | nucleus | 27.27 | 34.4 |
| CDY43239 | Canola | nucleus | 31.27 | 34.4 |
| CDY36077 | Canola | nucleus | 27.64 | 34.39 |
| CDY57524 | Canola | nucleus | 30.91 | 34.0 |
| CDY26462 | Canola | nucleus | 31.27 | 33.86 |
| CDY34718 | Canola | nucleus | 30.91 | 33.73 |
| CDY11824 | Canola | nucleus | 29.82 | 33.47 |
| CDY66153 | Canola | nucleus | 29.82 | 33.47 |
| CDY18911 | Canola | nucleus | 28.73 | 33.33 |
| CDX69499 | Canola | nucleus | 31.64 | 32.95 |
| CDY15724 | Canola | nucleus | 30.18 | 32.94 |
| CDX70651 | Canola | nucleus | 30.91 | 32.82 |
| CDX78653 | Canola | nucleus | 30.91 | 32.82 |
| CDX72465 | Canola | nucleus | 28.36 | 32.5 |
| CDY49287 | Canola | nucleus | 28.36 | 32.5 |
| CDY53885 | Canola | nucleus | 30.18 | 32.3 |
| CDX84935 | Canola | nucleus | 29.45 | 32.27 |
| CDX69345 | Canola | nucleus | 26.55 | 32.16 |
| CDX74754 | Canola | nucleus | 29.82 | 32.03 |
| CDY27603 | Canola | nucleus | 29.45 | 32.02 |
| CDX69036 | Canola | nucleus | 27.64 | 31.67 |
| CDX75412 | Canola | nucleus | 27.64 | 31.67 |
| CDY42841 | Canola | nucleus | 27.64 | 31.67 |
| CDY16832 | Canola | nucleus | 27.64 | 31.54 |
| CDY18912 | Canola | nucleus | 27.64 | 31.54 |
| CDX90394 | Canola | nucleus | 26.18 | 31.44 |
| CDY71878 | Canola | endoplasmic reticulum | 29.82 | 31.18 |
| CDY25613 | Canola | nucleus | 25.82 | 31.14 |
| CDY02185 | Canola | nucleus | 27.27 | 31.12 |
| CDY47002 | Canola | nucleus | 27.27 | 31.12 |
| CDX75686 | Canola | nucleus | 25.82 | 31.0 |
| CDX89496 | Canola | nucleus | 25.82 | 31.0 |
| CDY03905 | Canola | nucleus | 30.18 | 30.74 |
| CDY58690 | Canola | nucleus | 26.91 | 30.71 |
| CDY04164 | Canola | nucleus | 28.36 | 30.23 |
| CDY45899 | Canola | nucleus | 26.91 | 29.72 |
| CDY02978 | Canola | nucleus | 27.27 | 29.3 |
| CDY51202 | Canola | nucleus | 27.27 | 29.18 |
| CDY00082 | Canola | nucleus | 26.18 | 29.03 |
| CDX86353 | Canola | nucleus | 26.18 | 28.92 |
| CDY33554 | Canola | nucleus | 26.91 | 28.91 |
| CDX89097 | Canola | nucleus | 25.82 | 28.86 |
| CDX95960 | Canola | nucleus | 26.55 | 28.52 |
| CDY65811 | Canola | nucleus | 26.55 | 28.52 |
| CDY04265 | Canola | nucleus | 27.27 | 27.08 |
| CDY07357 | Canola | nucleus | 27.27 | 25.95 |
| CDY33113 | Canola | nucleus | 28.36 | 25.24 |
| CDX71166 | Canola | nucleus | 26.55 | 20.98 |
| CDX85287 | Canola | nucleus | 13.45 | 19.79 |
| CDY35780 | Canola | nucleus | 13.82 | 19.29 |
| CDY42485 | Canola | nucleus | 26.18 | 19.05 |
| CDY45709 | Canola | nucleus | 9.45 | 15.03 |
| CDY49686 | Canola | nucleus | 9.45 | 15.03 |
| CDY65346 | Canola | cytosol | 1.09 | 12.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EIM7 | EnsemblPlants:CDY00589 | ProteinID:CDY00589 | ProteinID:CDY00589.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00110351001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE26E0 | : | : | : |
Description
BnaC04g23360D
Coordinates
chrLK031920:+:496746..504624
Molecular Weight (calculated)
31554.5 Da
IEP (calculated)
9.083
GRAVY (calculated)
-0.719
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGGSSHDA ESNKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VVFSTRGRLY EYANNRNQLL LCNKLSCAYK SNYHSWLFTI
101: ILGVKGTIER YKKACSDAVN PPTITEANTQ YYQQEASKLR RQIRDIQNSN RHIVGESLGS LNFKELKNLE GRLEKGINRV RSKKNELLVA ELEYMQKREM
201: ELQHDNMYLR AQIGNCARLD PEQQESSVIQ GTAVYESGLS SHDQSQNYNR SYIPVNLLEP NQQFSGQDQP PLQLV
101: ILGVKGTIER YKKACSDAVN PPTITEANTQ YYQQEASKLR RQIRDIQNSN RHIVGESLGS LNFKELKNLE GRLEKGINRV RSKKNELLVA ELEYMQKREM
201: ELQHDNMYLR AQIGNCARLD PEQQESSVIQ GTAVYESGLS SHDQSQNYNR SYIPVNLLEP NQQFSGQDQP PLQLV
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSFIYL LLEKKKKKKK KKNLWIYSSH
101: VVRGTIERYK KACSDAVNPP SVTEANTQYY QQEASKLRRQ IRDIQNSNRH IVGESLGSLN FKELKNLEGR LEKGISRVRS KKNELLVAEI EYMQKREMEL
201: QHNNMYLRAK IAEGARLNPD QQESSVIQGT TVYESGVSSH DQSQHYNRNY IPVNLLEPNQ QFSGQDQPPL QLV
101: VVRGTIERYK KACSDAVNPP SVTEANTQYY QQEASKLRRQ IRDIQNSNRH IVGESLGSLN FKELKNLEGR LEKGISRVRS KKNELLVAEI EYMQKREMEL
201: QHNNMYLRAK IAEGARLNPD QQESSVIQGT TVYESGVSSH DQSQHYNRNY IPVNLLEPNQ QFSGQDQPPL QLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.