Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008674.1-P | Field mustard | nucleus | 98.03 | 98.81 |
| CDX69499 | Canola | nucleus | 97.64 | 93.94 |
| CDX78653 | Canola | nucleus | 94.09 | 92.28 |
| CDX70651 | Canola | nucleus | 93.7 | 91.89 |
| AT5G15800.2 | Thale cress | nucleus | 93.31 | 90.46 |
| CDY57524 | Canola | nucleus | 84.25 | 85.6 |
| CDY43239 | Canola | nucleus | 84.25 | 85.6 |
| CDY34718 | Canola | nucleus | 83.07 | 83.73 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 74.02 | 77.37 |
| KRH45097 | Soybean | nucleus | 74.8 | 75.7 |
| KRH18339 | Soybean | nucleus | 73.23 | 74.7 |
| KRH01380 | Soybean | nucleus | 74.41 | 74.12 |
| KRG93698 | Soybean | nucleus | 72.44 | 73.9 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 19.29 | 73.13 |
| Solyc02g089200.2.1 | Tomato | nucleus | 63.39 | 65.45 |
| PGSC0003DMT400003483 | Potato | nucleus | 63.39 | 65.45 |
| GSMUA_Achr11P... | Banana | nucleus | 57.87 | 62.55 |
| CDY15724 | Canola | nucleus | 61.42 | 61.9 |
| CDY11824 | Canola | nucleus | 59.06 | 61.22 |
| CDY27603 | Canola | nucleus | 60.63 | 60.87 |
| CDY66153 | Canola | nucleus | 58.66 | 60.82 |
| EER97012 | Sorghum | nucleus | 57.87 | 60.49 |
| CDY72391 | Canola | nucleus | 17.72 | 60.0 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 59.45 | 59.92 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 59.45 | 59.92 |
| CDX84935 | Canola | nucleus | 59.06 | 59.76 |
| Os09t0507200-01 | Rice | nucleus | 58.27 | 59.68 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 59.06 | 59.52 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 59.06 | 59.52 |
| Zm00001d006094_P001 | Maize | nucleus | 58.27 | 58.96 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 56.69 | 58.54 |
| EES15309 | Sorghum | nucleus | 55.51 | 58.51 |
| Os08t0531700-01 | Rice | nucleus | 57.09 | 58.23 |
| CDY03905 | Canola | nucleus | 61.81 | 58.15 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 56.69 | 58.06 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 56.3 | 57.66 |
| Zm00001d021057_P001 | Maize | nucleus | 55.91 | 57.49 |
| Zm00001d031620_P001 | Maize | nucleus | 55.91 | 55.69 |
| CDY04164 | Canola | nucleus | 55.91 | 55.04 |
| CDY51202 | Canola | nucleus | 55.51 | 54.86 |
| CDY02978 | Canola | nucleus | 55.12 | 54.69 |
| HORVU7Hr1G054220.3 | Barley | nucleus | 54.72 | 54.3 |
| CDY19977 | Canola | nucleus | 21.65 | 53.92 |
| CDX79856 | Canola | nucleus | 18.11 | 51.69 |
| CDX71922 | Canola | nucleus | 24.8 | 46.67 |
| CDY34564 | Canola | nucleus | 39.37 | 45.87 |
| CDY48451 | Canola | nucleus | 27.56 | 45.75 |
| CDY18911 | Canola | nucleus | 42.52 | 45.57 |
| CDY33113 | Canola | nucleus | 55.12 | 45.31 |
| CDY36077 | Canola | nucleus | 39.37 | 45.25 |
| CDY18912 | Canola | nucleus | 42.52 | 44.81 |
| CDX74754 | Canola | nucleus | 44.09 | 43.75 |
| CDY53885 | Canola | nucleus | 44.09 | 43.58 |
| CDY49686 | Canola | nucleus | 28.74 | 42.2 |
| CDY45709 | Canola | nucleus | 28.74 | 42.2 |
| CDX89097 | Canola | nucleus | 39.76 | 41.06 |
| CDY58690 | Canola | nucleus | 38.58 | 40.66 |
| CDY42841 | Canola | nucleus | 38.19 | 40.42 |
| CDY02185 | Canola | nucleus | 37.8 | 39.83 |
| CDY47002 | Canola | nucleus | 37.4 | 39.42 |
| CDY16832 | Canola | nucleus | 37.4 | 39.42 |
| CDY65811 | Canola | nucleus | 38.58 | 38.28 |
| CDX95960 | Canola | nucleus | 38.19 | 37.89 |
| CDY33554 | Canola | nucleus | 38.19 | 37.89 |
| CDX79857 | Canola | nucleus | 35.83 | 37.3 |
| CDX90741 | Canola | nucleus | 33.86 | 37.23 |
| CDY00082 | Canola | nucleus | 36.22 | 37.1 |
| CDY45899 | Canola | nucleus | 35.83 | 36.55 |
| CDX86353 | Canola | nucleus | 35.43 | 36.14 |
| CDY04265 | Canola | nucleus | 38.58 | 35.38 |
| CDY09267 | Canola | nucleus | 34.65 | 35.34 |
| CDX78909 | Canola | nucleus | 35.04 | 35.32 |
| CDX98330 | Canola | nucleus | 34.25 | 35.08 |
| CDX98597 | Canola | nucleus | 34.65 | 35.06 |
| CDY25613 | Canola | nucleus | 31.1 | 34.65 |
| CDX75412 | Canola | nucleus | 32.68 | 34.58 |
| CDX75686 | Canola | nucleus | 31.1 | 34.5 |
| CDX89496 | Canola | nucleus | 31.1 | 34.5 |
| CDX69345 | Canola | nucleus | 30.71 | 34.36 |
| CDY07357 | Canola | nucleus | 38.98 | 34.26 |
| CDX69036 | Canola | nucleus | 32.28 | 34.17 |
| CDX90394 | Canola | nucleus | 30.32 | 33.62 |
| CDY49254 | Canola | nucleus | 35.83 | 33.09 |
| CDY49287 | Canola | nucleus | 31.1 | 32.92 |
| CDX72465 | Canola | nucleus | 30.71 | 32.5 |
| CDX89005 | Canola | nucleus | 34.25 | 31.52 |
| CDY00589 | Canola | nucleus | 33.86 | 31.27 |
| CDX99406 | Canola | nucleus | 35.04 | 28.53 |
| CDY60297 | Canola | nucleus | 31.89 | 27.74 |
| CDY42485 | Canola | nucleus | 40.16 | 26.98 |
| CDX85287 | Canola | nucleus | 18.9 | 25.67 |
| CDX67765 | Canola | nucleus | 34.65 | 25.29 |
| CDY13236 | Canola | mitochondrion | 19.68 | 24.88 |
| CDY35780 | Canola | nucleus | 19.29 | 24.87 |
| CDY65347 | Canola | nucleus | 15.35 | 24.68 |
| CDY01574 | Canola | nucleus | 11.42 | 23.58 |
| CDX71166 | Canola | nucleus | 32.28 | 23.56 |
| CDY71878 | Canola | endoplasmic reticulum | 21.26 | 20.53 |
| CDY65346 | Canola | cytosol | 1.57 | 16.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GMN1 | UniProt:A0A078GMN1 | EnsemblPlants:CDY26462 | ProteinID:CDY26462 |
| ProteinID:CDY26462.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00035264001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF353 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF3E2F | SEG:seg |
Description
BnaC09g42060DBnaC09g42060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMN1]
Coordinates
chrLK032190:-:281888..284893
Molecular Weight (calculated)
28865.5 Da
IEP (calculated)
8.566
GRAVY (calculated)
-0.731
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS SNMIKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYESLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQSKEQM LLETNRALAI KLDDMIGVRS HHMGGGGGGG WEGNEQNVSY
201: EHHHQAQPQG LFQPLECNPT LQIGYDNPVG SEQITATTQA QAQPGNGYIP GWML
101: RYESLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQSKEQM LLETNRALAI KLDDMIGVRS HHMGGGGGGG WEGNEQNVSY
201: EHHHQAQPQG LFQPLECNPT LQIGYDNPVG SEQITATTQA QAQPGNGYIP GWML
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
Arabidopsis Description
SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.