Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27603 | Canola | nucleus | 98.41 | 97.63 |
| Bra032814.1-P | Field mustard | nucleus | 98.01 | 97.23 |
| AT1G24260.2 | Thale cress | nucleus | 93.63 | 93.63 |
| CDY15724 | Canola | nucleus | 88.84 | 88.49 |
| CDY66153 | Canola | nucleus | 85.26 | 87.35 |
| CDY11824 | Canola | nucleus | 84.86 | 86.94 |
| KRG97386 | Soybean | nucleus | 49.8 | 86.81 |
| CDY03905 | Canola | nucleus | 90.04 | 83.7 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 69.32 | 78.73 |
| KRH58800 | Soybean | nucleus | 74.1 | 76.23 |
| KRH42695 | Soybean | nucleus | 73.31 | 75.41 |
| Solyc05g015750.2.1 | Tomato | nucleus | 71.71 | 74.69 |
| PGSC0003DMT400056363 | Potato | nucleus | 71.71 | 74.69 |
| KRH31527 | Soybean | nucleus | 71.31 | 73.66 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 19.52 | 73.13 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 67.73 | 69.96 |
| CDY72391 | Canola | nucleus | 17.93 | 60.0 |
| CDY26462 | Canola | nucleus | 59.76 | 59.06 |
| CDY57524 | Canola | nucleus | 58.57 | 58.8 |
| CDY34718 | Canola | nucleus | 58.17 | 57.94 |
| CDY43239 | Canola | nucleus | 57.37 | 57.6 |
| CDX69499 | Canola | nucleus | 60.16 | 57.2 |
| CDX78653 | Canola | nucleus | 58.96 | 57.14 |
| CDX70651 | Canola | nucleus | 58.57 | 56.76 |
| CDY19977 | Canola | nucleus | 21.51 | 52.94 |
| CDX79856 | Canola | nucleus | 18.33 | 51.69 |
| CDY51202 | Canola | nucleus | 47.81 | 46.69 |
| CDX71922 | Canola | nucleus | 25.1 | 46.67 |
| CDY04164 | Canola | nucleus | 47.81 | 46.51 |
| CDY02978 | Canola | nucleus | 47.41 | 46.48 |
| CDY36077 | Canola | nucleus | 38.65 | 43.89 |
| CDY18911 | Canola | nucleus | 41.43 | 43.88 |
| CDY34564 | Canola | nucleus | 37.85 | 43.58 |
| CDY18912 | Canola | nucleus | 41.43 | 43.15 |
| CDY48451 | Canola | nucleus | 26.29 | 43.14 |
| CDY53885 | Canola | nucleus | 43.43 | 42.41 |
| CDX74754 | Canola | nucleus | 43.03 | 42.19 |
| CDX89097 | Canola | nucleus | 39.44 | 40.24 |
| CDY42841 | Canola | nucleus | 37.85 | 39.58 |
| CDY45899 | Canola | nucleus | 39.04 | 39.36 |
| CDY65811 | Canola | nucleus | 39.84 | 39.06 |
| CDY33554 | Canola | nucleus | 39.44 | 38.67 |
| CDY58690 | Canola | nucleus | 37.05 | 38.59 |
| CDY16832 | Canola | nucleus | 37.05 | 38.59 |
| CDY33113 | Canola | nucleus | 47.41 | 38.51 |
| CDY02185 | Canola | nucleus | 36.65 | 38.17 |
| CDY47002 | Canola | nucleus | 36.65 | 38.17 |
| CDX86353 | Canola | nucleus | 37.85 | 38.15 |
| CDY00082 | Canola | nucleus | 37.45 | 37.9 |
| CDX95960 | Canola | nucleus | 38.65 | 37.89 |
| CDY09267 | Canola | nucleus | 35.46 | 35.74 |
| CDY04265 | Canola | nucleus | 39.44 | 35.74 |
| CDX90741 | Canola | nucleus | 32.67 | 35.5 |
| CDX79857 | Canola | nucleus | 34.26 | 35.25 |
| CDX78909 | Canola | nucleus | 35.06 | 34.92 |
| CDX98597 | Canola | nucleus | 34.66 | 34.66 |
| CDX90394 | Canola | nucleus | 31.47 | 34.5 |
| CDX69345 | Canola | nucleus | 31.08 | 34.36 |
| CDY07357 | Canola | nucleus | 39.44 | 34.26 |
| CDX75686 | Canola | nucleus | 30.68 | 33.62 |
| CDX98330 | Canola | nucleus | 33.07 | 33.47 |
| CDX69036 | Canola | nucleus | 31.87 | 33.33 |
| CDX75412 | Canola | nucleus | 31.87 | 33.33 |
| CDY25613 | Canola | nucleus | 29.08 | 32.02 |
| CDX89496 | Canola | nucleus | 29.08 | 31.88 |
| CDY49686 | Canola | nucleus | 21.91 | 31.79 |
| CDY45709 | Canola | nucleus | 21.91 | 31.79 |
| CDY49254 | Canola | nucleus | 34.26 | 31.27 |
| CDY49287 | Canola | nucleus | 29.88 | 31.25 |
| CDX72465 | Canola | nucleus | 29.88 | 31.25 |
| CDY00589 | Canola | nucleus | 32.27 | 29.45 |
| CDX89005 | Canola | nucleus | 32.27 | 29.35 |
| CDX85287 | Canola | nucleus | 21.12 | 28.34 |
| CDX99406 | Canola | nucleus | 35.06 | 28.21 |
| CDY35780 | Canola | nucleus | 21.51 | 27.41 |
| CDY42485 | Canola | nucleus | 39.84 | 26.45 |
| CDY60297 | Canola | nucleus | 30.68 | 26.37 |
| CDY65347 | Canola | nucleus | 16.33 | 25.95 |
| CDX67765 | Canola | nucleus | 33.47 | 24.14 |
| CDY13236 | Canola | mitochondrion | 19.12 | 23.88 |
| CDY01574 | Canola | nucleus | 11.55 | 23.58 |
| CDX71166 | Canola | nucleus | 31.08 | 22.41 |
| CDY71878 | Canola | endoplasmic reticulum | 20.72 | 19.77 |
| CDY65346 | Canola | cytosol | 0.8 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078D738 | EnsemblPlants:CDX84935 | ProteinID:CDX84935 | ProteinID:CDX84935.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00142288001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EF0FB2 | : | : | : | : |
Description
BnaC05g21200D
Coordinates
chrLK031839:-:347048..349902
Molecular Weight (calculated)
29009.6 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.780
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKQYEFCSS SSMLRTLDRY QKCNYGAPEP NVPSREALAV ELDSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK HIRALRTQFM LDQLNDLQSK ERMLAETNKT LRLRLADGYQ MPLQLNPNPE DHDYGRHQQH
201: EHSHHQAFFQ PLECEPILQM GCQGQQDHGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK HIRALRTQFM LDQLNDLQSK ERMLAETNKT LRLRLADGYQ MPLQLNPNPE DHDYGRHQQH
201: EHSHHQAFFQ PLECEPILQM GCQGQQDHGM GAGPSVNNYM LGWLPYDTNS I
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.