Factsheet for Bra032814.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27603	Canola	nucleus	99.6	99.6
CDX84935	Canola	nucleus	97.23	98.01
AT1G24260.2	Thale cress	nucleus	93.28	94.02
Bra030032.1-P	Field mustard	nucleus	91.7	92.06
Bra010955.1-P	Field mustard	nucleus	85.38	88.52
KRG97386	Soybean	nucleus	49.41	86.81
VIT_01s0010g03900.t01	Wine grape	nucleus	68.77	78.73
KRH58800	Soybean	nucleus	73.91	76.64
KRH42695	Soybean	nucleus	73.12	75.82
PGSC0003DMT400056363	Potato	nucleus	71.54	75.1
Solyc05g015750.2.1	Tomato	nucleus	71.54	75.1
KRH31527	Soybean	nucleus	71.15	74.07
GSMUA_Achr9P01370_001	Banana	nucleus	67.98	70.78
Bra008674.1-P	Field mustard	nucleus	61.26	61.51
Bra006322.1-P	Field mustard	nucleus	60.08	60.8
Bra039170.1-P	Field mustard	nucleus	59.29	60.0
Bra021470.1-P	Field mustard	nucleus	58.89	59.13
Bra025411.1-P	Field mustard	nucleus	33.6	48.3
Bra025126.1-P	Field mustard	nucleus	49.01	48.25
Bra004361.1-P	Field mustard	nucleus	35.97	48.15
Bra026543.1-P	Field mustard	nucleus	48.22	45.35
Bra004927.1-P	Field mustard	nucleus	41.11	42.98
Bra000392.1-P	Field mustard	nucleus	43.48	42.8
Bra014454.1-P	Field mustard	nucleus	38.74	42.61
Bra017376.1-P	Field mustard	nucleus	40.32	41.98
Bra029347.1-P	Field mustard	nucleus	37.15	39.17
Bra038326.1-P	Field mustard	nucleus	39.13	38.67
Bra011021.1-P	Field mustard	nucleus	38.34	38.19
Bra035952.1-P	Field mustard	nucleus	36.36	38.17
Bra036201.1-P	Field mustard	nucleus	37.15	37.9
Bra012997.1-P	Field mustard	nucleus	35.97	37.76
Bra037895.1-P	Field mustard	nucleus	33.2	36.52
Bra000696.1-P	Field mustard	nucleus	32.81	35.93
Bra004007.1-P	Field mustard	nucleus	38.34	35.79
Bra007419.1-P	Field mustard	nucleus	34.39	35.51
Bra013364.1-P	Field mustard	nucleus	35.18	35.32
Bra004716.1-P	Field mustard	nucleus	33.99	35.25
Bra012564.1-P	Field mustard	nucleus	34.78	35.06
Bra010623.1-P	Field mustard	nucleus	29.64	35.05
Bra011797.1-P	Field mustard	nucleus	30.43	33.77
Bra014552.1-P	Field mustard	nucleus	32.41	33.06
Bra030222.1-P	Field mustard	nucleus	28.85	32.16
Bra039921.1-P	Field mustard	nucleus	28.85	32.16
Bra017638.1-P	Field mustard	nucleus	29.64	31.25
Bra003356.1-P	Field mustard	nucleus	33.2	30.77
Bra011509.1-P	Field mustard	nucleus	30.04	26.21
Bra040719.1-P	Field mustard	nucleus	15.02	22.35

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra032814	EnsemblPlants:Bra032814.1	EnsemblPlants:Bra032814.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EVI1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF351	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00025425F7	:	:	:	:

Description

AT1G24260 (E=8e-129) SEP3, AGL9 | SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor

Coordinates

chrA09:-:12620756..12622943

Molecular Weight (calculated)

29322.0 Da

IEP (calculated)

7.993

GRAVY (calculated)

-0.768

Length

253 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKQYEFCSS SSMLRTLDRY QKCNYGAPEP NVPSREALAV ELNSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELEL LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLAETNKT LRLRLADGYQ MPLQLNPNPE DHHHVDYGRH
201: QQHEHSHQAF FQPLECEPIL QMGYQGQQDH GMGAGPSVNN YMLGWLPYDT NSI

Best Arabidopsis Sequence Match ( AT1G24260.2 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.