Factsheet for Bra006322.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78653	Canola	nucleus	100.0	96.53
CDX70651	Canola	nucleus	99.6	96.14
Bra008674.1-P	Field mustard	nucleus	94.8	94.05
AT5G15800.2	Thale cress	nucleus	95.2	90.84
Bra021470.1-P	Field mustard	nucleus	85.6	84.92
Bra039170.1-P	Field mustard	nucleus	83.6	83.6
VIT_14s0083g01050.t01	Wine grape	nucleus	73.6	75.72
KRH45097	Soybean	nucleus	75.6	75.3
KRH18339	Soybean	nucleus	73.6	73.9
KRH01380	Soybean	nucleus	75.2	73.73
KRG93698	Soybean	nucleus	72.8	73.09
Solyc02g089200.2.1	Tomato	nucleus	63.6	64.63
PGSC0003DMT400003483	Potato	nucleus	63.6	64.63
GSMUA_Achr11P...	Banana	nucleus	58.4	62.13
Bra030032.1-P	Field mustard	nucleus	62.0	61.51
Bra010955.1-P	Field mustard	nucleus	58.8	60.25
Bra032814.1-P	Field mustard	nucleus	60.8	60.08
EER97012	Sorghum	nucleus	58.0	59.67
TraesCS5B01G286100.2	Wheat	nucleus	60.0	59.52
HORVU5Hr1G076400.1	Barley	nucleus	60.0	59.52
TraesCS5A01G286800.1	Wheat	nucleus	59.6	59.13
TraesCS5D01G294500.1	Wheat	nucleus	59.6	59.13
Os09t0507200-01	Rice	nucleus	58.4	58.87
Zm00001d006094_P001	Maize	nucleus	58.4	58.17
Os08t0531700-01	Rice	nucleus	57.2	57.43
EES15309	Sorghum	nucleus	55.2	57.26
TraesCS7B01G158600.1	Wheat	nucleus	56.0	56.91
Zm00001d021057_P001	Maize	nucleus	56.0	56.68
TraesCS7A01G260600.1	Wheat	nucleus	56.0	56.45
TraesCS7D01G261600.1	Wheat	nucleus	55.6	56.05
Zm00001d031620_P001	Maize	nucleus	55.6	54.51
Bra025126.1-P	Field mustard	nucleus	56.0	54.47
Bra026543.1-P	Field mustard	nucleus	56.8	52.79
HORVU7Hr1G054220.3	Barley	nucleus	54.0	52.73
Bra017376.1-P	Field mustard	nucleus	48.4	49.79
Bra004361.1-P	Field mustard	nucleus	36.4	48.15
Bra025411.1-P	Field mustard	nucleus	32.4	46.02
Bra004927.1-P	Field mustard	nucleus	41.6	42.98
Bra000392.1-P	Field mustard	nucleus	44.0	42.8
Bra014454.1-P	Field mustard	nucleus	38.8	42.17
Bra029347.1-P	Field mustard	nucleus	39.2	40.83
Bra012997.1-P	Field mustard	nucleus	38.8	40.25
Bra035952.1-P	Field mustard	nucleus	38.4	39.83
Bra011021.1-P	Field mustard	nucleus	40.0	39.37
Bra038326.1-P	Field mustard	nucleus	39.6	38.67
Bra000696.1-P	Field mustard	nucleus	34.8	37.66
Bra036201.1-P	Field mustard	nucleus	36.8	37.1
Bra037895.1-P	Field mustard	nucleus	34.0	36.96
Bra004716.1-P	Field mustard	nucleus	36.0	36.89
Bra007419.1-P	Field mustard	nucleus	36.0	36.73
Bra004007.1-P	Field mustard	nucleus	39.6	36.53
Bra014552.1-P	Field mustard	nucleus	34.8	35.08
Bra013364.1-P	Field mustard	nucleus	34.8	34.52
Bra030222.1-P	Field mustard	nucleus	31.2	34.36
Bra012564.1-P	Field mustard	nucleus	34.4	34.26
Bra039921.1-P	Field mustard	nucleus	30.8	33.92
Bra011797.1-P	Field mustard	nucleus	30.4	33.33
Bra010623.1-P	Field mustard	nucleus	28.0	32.71
Bra017638.1-P	Field mustard	nucleus	31.2	32.5
Bra003356.1-P	Field mustard	nucleus	34.4	31.5
Bra011509.1-P	Field mustard	nucleus	30.4	26.21
Bra040719.1-P	Field mustard	nucleus	16.4	24.12

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra006322	EnsemblPlants:Bra006322.1	EnsemblPlants:Bra006322.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CQ33
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF353	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000AE34D	SEG:seg	:	:

Description

AT5G15800 (E=4e-125) SEP1, AGL2 | SEP1 (SEPALLATA1); DNA binding / transcription factor

Coordinates

chrA03:-:3000325..3002505

Molecular Weight (calculated)

28551.2 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.706

Length

250 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMIKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYEGLQRQQR NLLGEDLGPL NSKELEQIER QLDGSLKQVR SIKTQYMLDQ LSDLQTKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGGW EGNEHNVSYA
201: HHQAQSQGLF QPLECNPTLQ MGYDNPVCSE QITATTQAQA QPGYIPDWML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.