Factsheet for Bra011021.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra019221.1-P
Bra020600.1-P
Bra030228.1-P
Bra038511.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26310.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G26310.1	Bra030228.1-P	AT2G22540.1	11439126
AT1G26310.1	Bra038511.1-P	AT2G22540.1	11439126
AT1G26310.1	Bra000393.1-P	AT2G45660.1	11439126
AT1G26310.1	Bra004928.1-P	AT2G45660.1	11439126
AT1G26310.1	Bra039324.1-P	AT2G45660.1	11439126
AT1G26310.1	Bra000393.1-P	AT2G45660.1	15805477
AT1G26310.1	Bra004928.1-P	AT2G45660.1	15805477
AT1G26310.1	Bra039324.1-P	AT2G45660.1	15805477
AT1G26310.1	Bra019221.1-P	AT4G24540.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36077	Canola	nucleus	87.01	100.0
CDY34564	Canola	nucleus	83.46	97.25
AT1G26310.1	Thale cress	nucleus	85.04	84.71
Bra004361.1-P	Field mustard	nucleus	57.09	76.72
Bra038326.1-P	Field mustard	nucleus	76.77	76.17
Bra004007.1-P	Field mustard	nucleus	73.62	69.0
VIT_01s0011g00100.t01	Wine grape	nucleus	65.35	68.88
PGSC0003DMT400072888	Potato	nucleus	59.45	61.89
Solyc05g056620.1.1	Tomato	nucleus	59.45	61.89
Bra025411.1-P	Field mustard	nucleus	40.55	58.52
GSMUA_Achr6P00050_001	Banana	nucleus	51.57	54.13
EER90862	Sorghum	nucleus	51.57	53.47
TraesCS5A01G391700.1	Wheat	nucleus	51.18	53.28
GSMUA_Achr2P13650_001	Banana	nucleus	51.18	52.85
GSMUA_Achr4P23540_001	Banana	nucleus	50.39	51.61
GSMUA_Achr7P00460_001	Banana	nucleus	50.0	50.8
TraesCS5B01G396600.2	Wheat	nucleus	50.0	50.6
Os03t0752800-02	Rice	nucleus	48.82	50.41
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	50.39	50.39
Bra029347.1-P	Field mustard	nucleus	47.24	50.0
Bra035952.1-P	Field mustard	nucleus	46.46	48.96
Bra012997.1-P	Field mustard	nucleus	46.46	48.96
EER97510	Sorghum	nucleus	48.43	48.62
Zm00001d022088_P004	Maize	nucleus	49.21	48.45
GSMUA_Achr8P04330_001	Banana	nucleus	46.46	48.16
Zm00001d018667_P003	Maize	nucleus	50.79	47.6
EER95753	Sorghum	nucleus	50.39	47.41
TraesCS2D01G262700.1	Wheat	nucleus	50.0	46.86
Os07t0108900-02	Rice	nucleus	49.21	46.82
GSMUA_Achr3P02280_001	Banana	nucleus	48.43	46.77
Zm00001d013259_P002	Maize	nucleus	51.18	46.59
Bra036201.1-P	Field mustard	nucleus	45.28	46.37
TraesCS2A01G261200.2	Wheat	nucleus	50.0	46.35
TraesCS2B01G281000.1	Wheat	nucleus	50.0	46.35
GSMUA_Achr3P30440_001	Banana	nucleus	41.34	45.65
GSMUA_Achr10P...	Banana	nucleus	51.18	45.61
Os07t0605200-01	Rice	nucleus	44.49	45.38
TraesCS2B01G200800.1	Wheat	nucleus	46.46	44.19
TraesCS2D01G181400.3	Wheat	nucleus	46.46	44.19
TraesCS2A01G174300.3	Wheat	nucleus	46.06	43.82
Zm00001d034045_P003	Maize	nucleus	49.21	42.96
Zm00001d007949_P001	Maize	nucleus	50.79	42.3
HORVU2Hr1G063800.7	Barley	nucleus, plastid	49.61	41.18
HORVU5Hr1G095630.3	Barley	nucleus, plastid	49.61	41.04
GSMUA_Achr3P25280_001	Banana	nucleus	42.52	40.6
Bra021470.1-P	Field mustard	nucleus	40.16	40.48
Bra010955.1-P	Field mustard	nucleus	38.58	40.16
Bra008674.1-P	Field mustard	nucleus	39.76	40.08
Bra006322.1-P	Field mustard	nucleus	39.37	40.0
Bra039170.1-P	Field mustard	nucleus	39.37	40.0
Bra030032.1-P	Field mustard	nucleus	38.98	39.29
Bra004927.1-P	Field mustard	nucleus	36.61	38.43
Bra032814.1-P	Field mustard	nucleus	38.19	38.34
Bra025126.1-P	Field mustard	nucleus	37.01	36.58
Bra000392.1-P	Field mustard	nucleus	37.01	36.58
Bra014454.1-P	Field mustard	nucleus	33.07	36.52
Os12t0501700-00	Rice	nucleus	33.46	36.48
Bra026543.1-P	Field mustard	nucleus	37.01	34.94
KXG23502	Sorghum	nucleus	29.92	34.08
Bra010623.1-P	Field mustard	nucleus	27.95	33.18
Bra037895.1-P	Field mustard	nucleus	29.92	33.04
Bra011797.1-P	Field mustard	nucleus	29.53	32.89
Bra012564.1-P	Field mustard	nucleus	32.28	32.67
Bra030222.1-P	Field mustard	nucleus	28.74	32.16
Bra013364.1-P	Field mustard	nucleus	31.89	32.14
Bra017638.1-P	Field mustard	nucleus	30.32	32.08
Bra004716.1-P	Field mustard	nucleus	30.71	31.97
Bra039921.1-P	Field mustard	nucleus	27.95	31.28
Bra000696.1-P	Field mustard	nucleus	28.35	31.17
Zm00001d023736_P001	Maize	nucleus	31.5	31.13
Bra014552.1-P	Field mustard	nucleus	30.32	31.05
Bra007419.1-P	Field mustard	nucleus	29.92	31.02
Bra017376.1-P	Field mustard	nucleus	27.56	28.81
Bra003356.1-P	Field mustard	nucleus	28.35	26.37
Bra011509.1-P	Field mustard	nucleus	27.56	24.14
Bra040719.1-P	Field mustard	nucleus	14.17	21.18

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AJ251300	EnsemblPlantsGene:Bra011021	EnsemblPlants:Bra011021.1	EnsemblPlants:Bra011021.1-P
ProteinID:CAB61825	ProteinID:CAB61825.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010582	GO:GO:0030154	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D3G7	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000034EA75

Description

AT1G26310 (E=8e-118) CAL, CAL1, agl10 | CAL (CAULIFLOWER); DNA binding / transcription factor

Coordinates

chrA08:-:17618922..17622655

Molecular Weight (calculated)

29880.8 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.893

Length

254 amino acids

Sequence
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISILCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAEKQL KAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEDLE SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEILEENSML TKQIKERESI LRTHQNQSEQ QNRSHHVAPQ
201: PQPQLNPYMI SHQASPFLNM GGMYQGEDPT AVRRNRLDLT LEPIYNCNLG YFAA

Best Arabidopsis Sequence Match ( AT1G26310.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA

Arabidopsis Description

CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.