Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G396600.2 | Wheat | nucleus | 97.95 | 95.22 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 97.54 | 93.7 |
| KRH75125 | Soybean | nucleus | 22.13 | 88.52 |
| EER90862 | Sorghum | nucleus | 84.43 | 84.08 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 95.08 | 75.57 |
| Os03t0752800-02 | Rice | nucleus | 74.18 | 73.58 |
| Zm00001d013259_P002 | Maize | nucleus | 83.2 | 72.76 |
| Zm00001d034045_P003 | Maize | nucleus | 79.51 | 66.67 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 72.54 | 64.6 |
| Bra004361.1-P | Field mustard | nucleus | 48.36 | 62.43 |
| CDY19977 | Canola | nucleus | 25.82 | 61.76 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 58.61 | 59.34 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 58.2 | 58.44 |
| KRH07467 | Soybean | nucleus | 56.15 | 58.05 |
| Solyc06g069430.2.1 | Tomato | nucleus | 58.2 | 57.96 |
| CDY36077 | Canola | nucleus | 52.46 | 57.92 |
| CDY34564 | Canola | nucleus | 51.64 | 57.8 |
| KRH45412 | Soybean | nucleus | 55.33 | 57.2 |
| PGSC0003DMT400010451 | Potato | nucleus | 58.61 | 57.2 |
| Solyc03g114830.2.1 | Tomato | nucleus | 57.79 | 57.09 |
| PGSC0003DMT400063313 | Potato | nucleus | 57.79 | 56.85 |
| KRH70974 | Soybean | nucleus | 56.15 | 56.38 |
| KRH63171 | Soybean | nucleus | 56.15 | 56.15 |
| KRH54740 | Soybean | nucleus | 55.74 | 55.74 |
| Bra025411.1-P | Field mustard | nucleus | 40.16 | 55.68 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 56.15 | 55.47 |
| KRH03173 | Soybean | nucleus | 53.69 | 54.81 |
| PGSC0003DMT400072888 | Potato | nucleus | 54.1 | 54.1 |
| KRH56774 | Soybean | nucleus | 54.1 | 54.1 |
| Solyc05g056620.1.1 | Tomato | nucleus | 53.69 | 53.69 |
| CDY58690 | Canola | nucleus | 52.87 | 53.53 |
| AT5G60910.1 | Thale cress | nucleus | 52.87 | 53.31 |
| CDY02185 | Canola | nucleus | 52.46 | 53.11 |
| Bra012997.1-P | Field mustard | nucleus | 52.05 | 52.7 |
| CDY42841 | Canola | nucleus | 51.64 | 52.5 |
| Bra029347.1-P | Field mustard | nucleus | 51.64 | 52.5 |
| AT1G69120.1 | Thale cress | nucleus | 54.92 | 52.34 |
| PGSC0003DMT400068325 | Potato | nucleus | 50.0 | 52.14 |
| CDY16832 | Canola | nucleus | 51.23 | 51.87 |
| CDY47002 | Canola | nucleus | 51.23 | 51.87 |
| Bra035952.1-P | Field mustard | nucleus | 51.23 | 51.87 |
| Bra011021.1-P | Field mustard | nucleus | 53.28 | 51.18 |
| CDX95960 | Canola | nucleus | 53.69 | 51.17 |
| CDY65811 | Canola | nucleus | 53.69 | 51.17 |
| Bra038326.1-P | Field mustard | nucleus | 53.69 | 51.17 |
| CDY33554 | Canola | nucleus | 53.28 | 50.78 |
| Solyc02g065730.1.1 | Tomato | nucleus | 48.36 | 50.43 |
| PGSC0003DMT400003485 | Potato | nucleus | 50.82 | 50.2 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 54.92 | 50.19 |
| AT1G26310.1 | Thale cress | nucleus | 52.05 | 49.8 |
| Solyc02g089210.2.1 | Tomato | nucleus | 50.41 | 49.2 |
| KRH45099 | Soybean | nucleus | 49.18 | 48.39 |
| KRG93701 | Soybean | nucleus | 48.36 | 48.36 |
| Bra004007.1-P | Field mustard | nucleus | 52.05 | 46.86 |
| KRH18331 | Soybean | nucleus | 46.72 | 46.72 |
| CDY04265 | Canola | nucleus | 52.87 | 46.57 |
| KRH01382 | Soybean | nucleus | 47.54 | 45.85 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 42.21 | 45.37 |
| CDY07357 | Canola | nucleus | 53.28 | 44.98 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 41.39 | 44.49 |
| Bra036201.1-P | Field mustard | nucleus | 45.08 | 44.35 |
| CDY00082 | Canola | nucleus | 45.08 | 44.35 |
| CDX86353 | Canola | nucleus | 43.85 | 42.97 |
| AT3G30260.1 | Thale cress | nucleus | 43.44 | 42.57 |
| CDY45899 | Canola | nucleus | 43.03 | 42.17 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 42.62 | 41.94 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 43.03 | 41.67 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 39.34 | 40.34 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 27.87 | 40.0 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 37.7 | 39.66 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 38.11 | 38.43 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 30.33 | 37.37 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 43.03 | 36.21 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 34.84 | 35.27 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 31.97 | 33.91 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 31.56 | 33.48 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 32.79 | 33.33 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 32.79 | 32.92 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 31.56 | 32.35 |
| CDX85287 | Canola | nucleus | 24.59 | 32.09 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 33.2 | 31.89 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 33.61 | 30.48 |
| CDY35780 | Canola | nucleus | 23.77 | 29.44 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 31.97 | 28.57 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 30.33 | 26.91 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 22.54 | 25.11 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5A01G391700 | EnsemblPlants:TraesCS5A01G391700.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:587411824..587423240
Molecular Weight (calculated)
27840.3 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.803
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIIFST KGKLYEFSTE SCMDKILERY ERYSYAEKVL VSSESEIQGN WCHEYRKLKA
101: KVETIQKCQK HLMGEDLESL NLKELQQLEQ QLESSLKHIR SRKNQLMHES ISELQKKERS LQEENKVLQK ELVEKQKAHA AQQDQTQPQT SSSSSSFMLR
201: DAPPAANTSI HPAATGERAE DAAVQPQAPP RTGLPPWMVS HING
101: KVETIQKCQK HLMGEDLESL NLKELQQLEQ QLESSLKHIR SRKNQLMHES ISELQKKERS LQEENKVLQK ELVEKQKAHA AQQDQTQPQT SSSSSSFMLR
201: DAPPAANTSI HPAATGERAE DAAVQPQAPP RTGLPPWMVS HING
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGLMQWSPN EQTY
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGLMQWSPN EQTY
Arabidopsis Description
AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.