Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G175200.2 | Wheat | nucleus | 97.35 | 91.67 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 92.92 | 87.14 |
| Os06t0217300-01 | Rice | nucleus | 81.86 | 82.96 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 77.43 | 76.75 |
| EER88077 | Sorghum | nucleus | 73.45 | 73.78 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 69.03 | 65.0 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 17.26 | 61.9 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 16.37 | 60.66 |
| KRH62216 | Soybean | nucleus | 17.7 | 60.61 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 16.37 | 59.68 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 59.29 | 58.52 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 16.37 | 56.92 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 23.01 | 55.32 |
| GSMUA_Achr10P... | Banana | nucleus | 55.75 | 55.26 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 51.33 | 51.1 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 50.88 | 50.88 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 16.81 | 50.67 |
| CDY13746 | Canola | nucleus | 52.65 | 50.42 |
| CDX76906 | Canola | nucleus | 52.21 | 50.0 |
| KRH74496 | Soybean | nucleus | 50.0 | 49.78 |
| Bra038511.1-P | Field mustard | nucleus | 52.65 | 49.38 |
| KRH69674 | Soybean | nucleus | 49.56 | 49.34 |
| PGSC0003DMT400041773 | Potato | nucleus | 51.33 | 48.74 |
| CDX89487 | Canola | nucleus | 50.88 | 48.73 |
| AT2G22540.1 | Thale cress | nucleus | 51.33 | 48.33 |
| Bra030228.1-P | Field mustard | nucleus | 50.44 | 48.31 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 17.7 | 46.51 |
| CDY11019 | Canola | nucleus | 44.25 | 46.3 |
| Bra019221.1-P | Field mustard | nucleus | 44.25 | 46.3 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 60.18 | 46.26 |
| KRH52935 | Soybean | nucleus | 47.35 | 45.73 |
| CDY03445 | Canola | nucleus | 44.69 | 45.7 |
| AT4G24540.1 | Thale cress | nucleus | 44.25 | 45.45 |
| PGSC0003DMT400024247 | Potato | nucleus | 46.9 | 45.11 |
| KRH42097 | Soybean | nucleus | 40.71 | 44.88 |
| KRH49819 | Soybean | nucleus | 40.71 | 44.66 |
| CDX92641 | Canola | nucleus | 45.13 | 44.54 |
| Solyc11g010570.1.1 | Tomato | nucleus | 52.21 | 44.53 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 35.4 | 44.44 |
| PGSC0003DMT400083739 | Potato | nucleus | 41.59 | 42.53 |
| KRH10603 | Soybean | nucleus | 35.4 | 38.46 |
| KRH21764 | Soybean | nucleus | 34.51 | 37.86 |
| Solyc04g076280.2.1 | Tomato | vacuole | 32.3 | 37.44 |
| CDY25607 | Canola | nucleus | 28.76 | 37.14 |
| KRH10606 | Soybean | nucleus | 33.19 | 35.55 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 28.32 | 34.97 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 48.23 | 34.06 |
| Solyc01g105800.2.1 | Tomato | nucleus | 40.71 | 32.97 |
| KRH21757 | Soybean | nucleus | 34.07 | 31.05 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF342 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS7D01G176700 | EnsemblPlants:TraesCS7D01G176700.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:128912416..128919115
Molecular Weight (calculated)
25218.8 Da
IEP (calculated)
5.971
GRAVY (calculated)
-0.570
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERRAIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS SMNEIIDKYS THSKNLGKSD QQPAIDLNLE HCKYDSLNEQ
101: LAEASLRLRH MRGEELDGLS VGELQQMEKN LETGLQRVLC TKDRQFMQQI SDLQQKGTQL AEENMRLKNQ MHEVPTVSTV AVAEAENVVP EDAHSSDSVM
201: TAVHSGSSQD NDDGSDISLK LALPWK
101: LAEASLRLRH MRGEELDGLS VGELQQMEKN LETGLQRVLC TKDRQFMQQI SDLQQKGTQL AEENMRLKNQ MHEVPTVSTV AVAEAENVVP EDAHSSDSVM
201: TAVHSGSSQD NDDGSDISLK LALPWK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.