Factsheet for VIT_15s0024g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00360.t01	Wine grape	nucleus	86.15	88.89
VIT_00s0729g00010.t01	Wine grape	nucleus	83.08	87.1
VIT_03s0167g00100.t01	Wine grape	nucleus	81.54	86.89
VIT_03s0017g00450.t01	Wine grape	nucleus	81.54	70.67
VIT_15s0024g02000.t01	Wine grape	nucleus	81.54	61.63
VIT_03s0017g00440.t01	Wine grape	nucleus	81.54	56.38
Zm00001d044899_P001	Maize	nucleus	58.46	53.52
VIT_15s0107g00120.t01	Wine grape	nucleus	89.23	32.22
KRH10603	Soybean	nucleus	75.38	23.56
KRH21764	Soybean	nucleus	73.85	23.3
PGSC0003DMT400083739	Potato	nucleus	76.92	22.62
KRH42097	Soybean	nucleus	70.77	22.44
KRH49819	Soybean	nucleus	70.77	22.33
GSMUA_Achr10P...	Banana	nucleus	73.85	21.05
KRH10606	Soybean	nucleus	67.69	20.85
VIT_00s0313g00070.t01	Wine grape	nucleus	70.77	20.26
GSMUA_Achr3P06800_001	Banana	nucleus	70.77	20.09
Zm00001d018142_P001	Maize	nucleus	63.08	18.55
Zm00001d052180_P001	Maize	nucleus	61.54	18.1
Solyc01g105800.2.1	Tomato	nucleus	76.92	17.92
KRH21757	Soybean	nucleus	67.69	17.74
TraesCS6A01G313800.1	Wheat	nucleus	61.54	17.54
TraesCS6B01G343900.1	Wheat	cytosol	61.54	17.54
TraesCS6D01G293200.1	Wheat	nucleus	61.54	17.54
KXG31156	Sorghum	nucleus	61.54	17.54
Os02t0761000-01	Rice	nucleus	61.54	17.54
HORVU6Hr1G077300.8	Barley	nucleus	61.54	17.39
EER88077	Sorghum	nucleus	58.46	16.89
Os06t0217300-01	Rice	nucleus	56.92	16.59
TraesCS7D01G176700.1	Wheat	nucleus	56.92	16.37
GSMUA_Achr9P15180_001	Banana	nucleus	72.31	15.99
KXG40019	Sorghum	nucleus	55.38	15.52
TraesCS4D01G301100.1	Wheat	nucleus	53.85	15.49
TraesCS7A01G175200.2	Wheat	nucleus	56.92	15.42
TraesCS7B01G080300.2	Wheat	cytosol	56.92	15.35
TraesCS4B01G302600.2	Wheat	nucleus	53.85	15.35
HORVU4Hr1G077850.13	Barley	nucleus	53.85	14.96
VIT_18s0001g07460.t01	Wine grape	nucleus	72.31	14.69
Os03t0186600-01	Rice	nucleus	55.38	14.52
Zm00001d027957_P001	Maize	nucleus	55.38	14.23
VIT_03s0167g00070.t01	Wine grape	nucleus	13.85	4.92
HORVU7Hr1G036130.10	Barley	nucleus, plastid	13.85	3.75
Zm00001d027955_P001	Maize	extracellular, golgi	7.69	2.78
TraesCS4A01G002600.1	Wheat	nucleus	3.08	1.23

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB62126	ProteinID:CCB62126.1	UniProt:F6I5A8	EMBL:FN596748
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002109BCE	ArrayExpress:VIT_15s0024g01860
EnsemblPlantsGene:VIT_15s0024g01860	EnsemblPlants:VIT_15s0024g01860.t01	:	:	:	:

Description

No Description!

Coordinates

chr15:+:3906352..3910072

Molecular Weight (calculated)

7410.1 Da

IEP (calculated)

10.745

GRAVY (calculated)

-0.132

Length

65 amino acids

Sequence
(BLAST)

1: MARQKIQIKK IDNTAARQVT FSKRRRGLFK KAQDISILCD AEIALIVFSA AGKLFEYSSS RYVID

Best Arabidopsis Sequence Match ( AT4G24540.1 )
(BLAST)

001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE

Arabidopsis Description

AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.